Locus 6856

Sequence ID X_DroMel_CAF1
Location 17,093,976 – 17,094,076
Length 100
Max. P 0.652533
window11220

overview

Window 0

Location 17,093,976 – 17,094,076
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 74.74
Mean single sequence MFE -43.88
Consensus MFE -21.91
Energy contribution -23.68
Covariance contribution 1.78
Combinations/Pair 1.17
Mean z-score -1.76
Structure conservation index 0.50
SVM decision value 0.25
SVM RNA-class probability 0.652533
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17093976 100 + 22224390
GCGCCGCCUACGAGCGCAUCCUGCUGGAUGCCAAUGCGGGAGUGGACCAACAUGUGGGCUAUUUUAGCAAGAGGCAAGUGGUUACAUCCAACC--GGGAAU--C
((((((....)).)))).(((((.((((((((..(((..((((((.(((.....))).))))))..)))...))))..((....))))))..)--))))..--. ( -35.90)
>DroVir_CAF1 116572 103 + 1
GCGCCGCCUACGAGCGCAUCCUGCUUGAUGCCAAUGCUGGCGUCGAGCAGCAUGUCGGCUACUUCAGCAGGCGCCAUGC-UUGCCAGACAGAUGCGGCGCCAGA
(((((((.....(((((((.(((((((((((((....))))))))))))).))))..))).((((.((((((.....))-))))..)).))..))))))).... ( -52.20)
>DroPse_CAF1 110128 98 + 1
GCGCCGCCUACGAGCGGGUGCUCCUGGACGCUAAUGCUGGUGUCGACCAGCAUGUGGGGUACUUCAGCAGACGCCAGCA-GCAGCAG-CAGCA--GGGAGC--A
((.((((......))))))((((((.(..(((..((((((((((.....((.((.((....)).)))).))))))))))-..)))..-)....--))))))--. ( -43.80)
>DroGri_CAF1 110274 97 + 1
GCGCCGCCUACGAGCGCAUCCUGCUGGACGCCAACGCUGGCGUUGAGCAGCACGUUGGCUACUUUAGCAGGCGGCAGAC-UGAUCAA-CA-----GGCGGCUGA
(((((((((...((((....(((((.(((((((....))))))).)))))..)))).((((...)))))))))))...(-((.....-))-----)))...... ( -44.60)
>DroEre_CAF1 92381 100 + 1
GCGCCGCCUACGAGCGCAUCCUGCUGGACGCCAGUGCGGGAGUGGACCAGCACGUGGGCUACUUUAGCAGGAGGCAAGUGCUGCCAUCCAGCC--GCGAGU--C
((((((....)).)))).((((((((((.(((.((((.((......)).))))...)))...))))))))))(((..((((((.....))).)--))..))--) ( -42.90)
>DroYak_CAF1 96618 100 + 1
GCGCCGCCUACGAGCGCAUCCUGCUGGACGCCAAUGCGGGCGUGGAUCAGCACGUGGGCUACUUCAGCCGCAGGCAAGUGAUGCCAUCCAGCC--AGGAGU--C
((((((....)).)))).((((((((((......(((..(((((......))))).((((.....)))))))((((.....)))).))))).)--))))..--. ( -43.90)
>consensus
GCGCCGCCUACGAGCGCAUCCUGCUGGACGCCAAUGCGGGCGUGGACCAGCACGUGGGCUACUUCAGCAGGAGGCAAGU_GUGCCAUCCAGCC__GGGAGC__A
((((((....)).))))..(((((((((.(((.((((.((......)).))))...)))...)))))))))................................. (-21.91 = -23.68 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:30 2006