| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,090,411 – 17,090,507 |
| Length | 96 |
| Max. P | 0.567459 |
| Location | 17,090,411 – 17,090,507 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.34 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -13.35 |
| Energy contribution | -13.85 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17090411 96 - 22224390 AAAACAGCUGAAAUCAUCAGCCAACAAAUGCUUCAGUGAUUUUGAAGGGUAAAGCCAUAAA-AAGGAAAAUAAUUUCUUU---UGGGCGCGCUGGAAAAC ....(((((((.....)))((......((.((((((.....)))))).))...(((...((-((((((.....)))))))---).)))))))))...... ( -24.80) >DroPse_CAF1 105561 98 - 1 AAAACACCCGAAAUCACC-UCAAACAAAUGCUUCAGUGAUUUUGAGGGGUAAAACCAUAAA-AUGAGGAAUAAUUUCUUCAUGCAGGUGAGUUGGAAAAU .......((((..(((((-((......((.((((((.....)))))).))...........-((((((((....))))))))).)))))).))))..... ( -25.80) >DroSec_CAF1 97288 96 - 1 AAAACAGCUGAAAUCAUCAGCCAACAAAUGCUUCAGUGAUUUUGAAGGGUAAAGCCAUAAA-AAGGAAAAUAAUUUCUUU---UGGGCGCGCUGGGAAAC ....(((((((.....)))((......((.((((((.....)))))).))...(((...((-((((((.....)))))))---).)))))))))...... ( -24.80) >DroEre_CAF1 88720 93 - 1 AAAAGAGCUGAAAUCAUCAGCUAGCAAAUGCUCCACUGAUUUUGAAGGGUAA-ACCAUAAA-AAGGAAAAUAAUUUCUUC---UGGGC--GCUGGAAAAC .....((((((.....))))))(((...(((((..(.......)..))))).-.(((....-((((((.....)))))).---)))..--)))....... ( -17.10) >DroYak_CAF1 92870 97 - 1 AAAAGAGCUCAAAUCAUCAGCUCACAAAUGCUCCAGUGAUUUUGAAGGGUAAAACCAUAAAAAAGGAAAAUCAUUUCUUU---UGGGCGCGCUGGAAAAC ....(((((.........)))))........(((((((........((......)).....((((((((....)))))))---).....))))))).... ( -22.60) >DroPer_CAF1 103805 98 - 1 AAAACACCCGAAAUCACC-UCAAACAAAUGCUUCAGUGAUUUUGAGGGGUAAAACCAUAAA-AUGAGGAAUAAUUUCUUCAUGCAGGUGAGUUGGAAAAU .......((((..(((((-((......((.((((((.....)))))).))...........-((((((((....))))))))).)))))).))))..... ( -25.80) >consensus AAAACAGCUGAAAUCAUCAGCAAACAAAUGCUUCAGUGAUUUUGAAGGGUAAAACCAUAAA_AAGGAAAAUAAUUUCUUC___UGGGCGCGCUGGAAAAC ................(((((......((.((((((.....)))))).))...(((......((((((.....))))))......)))..)))))..... (-13.35 = -13.85 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:29 2006