Locus 6854

Sequence ID X_DroMel_CAF1
Location 17,087,402 – 17,087,494
Length 92
Max. P 0.860847
window11218

overview

Window 8

Location 17,087,402 – 17,087,494
Length 92
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 89.01
Mean single sequence MFE -15.35
Consensus MFE -11.90
Energy contribution -13.30
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.78
SVM decision value 0.83
SVM RNA-class probability 0.860847
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17087402 92 + 22224390
GUAGAAUCUGGAAAGAAAACCAAAAAAAAAAAAAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACACACACAC-----
((((..(((((((.......(((((.((((....((((((.........))).)))....)))).)))))))))))).))))..........----- ( -11.51)
>DroSec_CAF1 94163 86 + 1
GUAGAAUCUGGAAAGAAAAACAAAAA--AAAAAAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACA----CAC-----
((((..(((((((...(((((((((.--......((((((.........))).)))....))))))))).))))))).))))...----...----- ( -16.80)
>DroSim_CAF1 84858 87 + 1
GUAGAAUCUGGAAAGAAAAACAAAAA---AAAAAAUGGGUAAUAAUAAAACCGCACAAAAUUUUGUUUUGUUUCGGAGUUGCACACA--CAC-----
((((..(((((((...(((((((((.---......(((............))).......))))))))).))))))).)))).....--...----- ( -16.14)
>DroEre_CAF1 85721 88 + 1
GUAGAAUCUGGAAAGAAACCCACAA-------AAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACACA--CACACACA
((((..(((((((.((((((((...-------...)))))............(((........)))))).))))))).)))).....--........ ( -14.70)
>DroYak_CAF1 89888 84 + 1
GUAGAAUCUGGAAAGAAAAACACAA------AAAAUGGGUAAUAAUAAAACCGCAUGAAAUUUGGUUUUGUUUCGGAGUUGCACACA--CAC-----
((((..(((((((...(((((.(((------(..((((((.........))).)))....))))))))).))))))).)))).....--...----- ( -17.60)
>consensus
GUAGAAUCUGGAAAGAAAAACAAAAA___AAAAAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACACA__CAC_____
((((..(((((((...(((((((((.........((((((.........))).)))....))))))))).))))))).))))............... (-11.90 = -13.30 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:28 2006