Locus 6852

Sequence ID X_DroMel_CAF1
Location 17,084,450 – 17,084,553
Length 103
Max. P 0.874551
window11215

overview

Window 5

Location 17,084,450 – 17,084,553
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -44.07
Consensus MFE -27.73
Energy contribution -28.40
Covariance contribution 0.67
Combinations/Pair 1.23
Mean z-score -1.95
Structure conservation index 0.63
SVM decision value 0.89
SVM RNA-class probability 0.874551
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17084450 103 - 22224390
UUCCUGCUAAUCUGGCUGAUGCGGCUCAUCCGGCUGGCGUGCGAACCGCGCUCCGAGUUGCACUUGGAGCCGCAGAGCGAGUUCUCGCAGAAGCGACAGCACU
...((((....((.(((..((((((((...(((((((.(((((...))))).)).)))))......)))))))).))).)).....))))..((....))... ( -43.40)
>DroVir_CAF1 104089 94 - 1
------UUGGCGCGAUUG---CAGCUGAGGCGGCUCGCAUGGGAGCCGCGCUCCGAAUUGCAUUUGGAGCCGCAGAGUGAGUUGUCGCAGUAGCGGCAGCAUU
------....(((..(((---(.......(((((((......)))))))(((((((((...))))))))).)))).))).((((((((....))))))))... ( -45.40)
>DroGri_CAF1 98650 93 - 1
----------UGCGAUUGUUGCAGCUGAGGCGACUCGCAUGCGAGCUGCGCUCCGAGUUGCACUUGGAGCCGCACAUUGAGUUGUCGCAGAAGCGGCAACAUU
----------((((......(((((((((....)))(....).))))))((((((((.....))))))))))))......((((((((....))))))))... ( -45.00)
>DroSim_CAF1 82018 103 - 1
UUCCUGCUAAUCUGGCUGAUGCGGCUCAUCCGGCUGGCGUGCGAACCGCGCUCCGAGUUGCACUUGGAGCCGCAGAGCGAGUUCUCGCAGAAGCGGCAGCACU
.....((((..((((.(((......))).)))).))))((((...((((((((((((.....))))))))......((((....))))....))))..)))). ( -43.80)
>DroMoj_CAF1 109478 103 - 1
UUGUUGUUGUUGCGAUUGCUGCAGCUGAGCCGACUCGCAUGGGAGCCGCGCUCCGAGUUGCACUUGGAGCCGCAGAGCGAAUUGUCGCAGAAGCGGCAGCACU
..(((((....)))))((((((.(((....((((((((..((...))((((((((((.....))))))).)))...))))...))))....))).)))))).. ( -42.50)
>DroAna_CAF1 82352 103 - 1
CCCCGGCUUAUCUGGCUGAUCCGGCUGAGGCGACUGGCGUGGGAGCCGCGCUCCGAGUUGCACUUGGAGCCGCAGAGGGAGUUCUCGCAGAAGCGACAGCACU
.(((((((((((.....)))((((((.((....))))).))))))))((((((((((.....))))))).)))...))).(((.((((....)))).)))... ( -44.30)
>consensus
UUCCUGCUAAUCCGACUGAUGCAGCUGAGCCGACUCGCAUGCGAGCCGCGCUCCGAGUUGCACUUGGAGCCGCAGAGCGAGUUCUCGCAGAAGCGGCAGCACU
...................((((((.(((....))))).)))).(((((((((((((.....))))))))......((((....))))....)))))...... (-27.73 = -28.40 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:26 2006