Locus 6851

Sequence ID X_DroMel_CAF1
Location 17,082,346 – 17,082,449
Length 103
Max. P 0.886098
window11214

overview

Window 4

Location 17,082,346 – 17,082,449
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.71
Mean single sequence MFE -35.84
Consensus MFE -23.62
Energy contribution -26.66
Covariance contribution 3.04
Combinations/Pair 1.03
Mean z-score -2.02
Structure conservation index 0.66
SVM decision value 0.94
SVM RNA-class probability 0.886098
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17082346 103 - 22224390
-----------------GAAGCUUGUUAAACGGAUGGGCACAGGAGGAAUGUAUCCUGCCCAAAUAGCAUUUUCGUGGAGUGUUAACUUUCCGAGAGUCAGCGCAAAUCUGUUGAAGAGC
-----------------...((((....((((((((((((..(((........)))))))).....(((((((((..((((....))))..)))))))..))....)))))))...)))) ( -35.80)
>DroSec_CAF1 89218 103 - 1
-----------------GAAGCUUGUUAAGCGGAUGGGCACAGGAGGAAGGUAUCCUGCCCACAUAGCGUUUUCGUGGAGUUGUAACUUUCCGAGAGUCAUCGCAAAUCUGUUGAAGAGC
-----------------...((((....((((((((((((..(((........)))))))).....(((((((((..((((....))))..))))))....)))..)))))))...)))) ( -34.90)
>DroSim_CAF1 79507 103 - 1
-----------------GAAGCUUGUUAAGCGGAUGGGCACAGGAGGAAGGUAUCCUGCCCACAUAGCGUUUUCGUGGAGUUGUAACUUUCCGAGAGUCAUCGCAAAUCUGUUGAAGAGC
-----------------...((((....((((((((((((..(((........)))))))).....(((((((((..((((....))))..))))))....)))..)))))))...)))) ( -34.90)
>DroEre_CAF1 80716 105 - 1
G---------------CGAAGCUUGUUAAACGGAUGGGCACAGGAGGAAGGUAUCCUGCCCAAGUUACGAUUUCGUGGAGUCUAAAGUUGGCGAGAGGCAACGCGAAGCGGUUGAAGAGC
.---------------....((((....(((...((((((..(((........))))))))).....((.(((((((..((((...(....)...))))..))))))))))))...)))) ( -33.60)
>DroYak_CAF1 84617 112 - 1
GACUCGCACUCCAAAGCGAAGCUGGU--------UGGGCACAGGAGGAAGGUAUCCUGCCCGAGUUGCAAUUGCGCGGAGUGUAAACUUGGCGAGAGGCAGCGCAAAUCUGUUGAAGAGC
..((((((((((...((((.((.(.(--------((((((..(((........)))))))))).).))..))))..)))))))....(..((.(((.((...))...)))))..).))). ( -40.00)
>consensus
_________________GAAGCUUGUUAAACGGAUGGGCACAGGAGGAAGGUAUCCUGCCCAAAUAGCGUUUUCGUGGAGUGUUAACUUUCCGAGAGUCAGCGCAAAUCUGUUGAAGAGC
....................((((....((((((((((((..(((........)))))))).....(((((((((..((((....))))..))))))....)))..)))))))...)))) (-23.62 = -26.66 +   3.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:25 2006