Locus 6850

Sequence ID X_DroMel_CAF1
Location 17,073,835 – 17,073,942
Length 107
Max. P 0.713029
window11213

overview

Window 3

Location 17,073,835 – 17,073,942
Length 107
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 87.56
Mean single sequence MFE -33.74
Consensus MFE -25.34
Energy contribution -25.78
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.75
SVM decision value 0.38
SVM RNA-class probability 0.713029
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17073835 107 + 22224390
GCCUGCGCA-------UCGGGCCAUUUGACUUCAUUUGAUUUCGAGAGCAGACGCCAGAUGCCAAUUGGCGAUUGCCAUUCAUUUGGCACUCCACCGACACGGCCACCUCCCCC
(((((.(((-------((.(((..((((.(((...(((....)))))))))).))).))))))).((((.((.(((((......))))).))..))))...))).......... ( -32.10)
>DroSec_CAF1 78272 107 + 1
GCCUGCGCA-------CCGGGCCAUUUGACUUCAUUUGAUUUCGAGAGCAGAUGCCAGAUGCCAAUUGGCGAUUGCCAUUCAUUUGGCACUUCACCGACACGGUCACCUCCUCC
(((((....-------.)))))...((((..((....))..))))(((.((.(((((((((.....((((....))))..)))))))))....((((...))))...)).))). ( -31.20)
>DroSim_CAF1 64611 107 + 1
GCCUGCGCA-------CCGGGCCAUUUGACUUCAUUUGAUUUCGAGAGCAGAUGCCAGAUGCCAAUUGGCGAUUGCCAUUCAUUUGGCACUCCACCGACACGGCCACCUCCUCC
((....)).-------...((((.(((((..((....))..))))).(.((.(((((((((.....((((....))))..))))))))))).)........))))......... ( -30.90)
>DroEre_CAF1 73795 107 + 1
GCCUGCGCACUUUAGUGCAGGCCAUUUGAAUUCACUUGAUUUCGAGAGCAGAUGCCUGAUGCCAAUUGGCGAUUGCCAUUCAUUUGGCAGUCAACCGACACUGCCAC-------
((((((((......))))))))..((((((.((....)).)))))).((((.((.(....(((....)))((((((((......))))))))....).))))))...------- ( -42.90)
>DroYak_CAF1 77437 108 + 1
GCUUGCGCUG------CCGGGCCAUUUGACUUCAUUUGAUUUCGAGAGCAAAUGCCAGAUGCCAAUUGGCGAUUGCCAUUCAUUUGGCACUCAGCCGACACUGCCACUGCCACC
((..(((.((------.(((((((.(((....(((((((((((....).))))..)))))).))).))))((.(((((......))))).))..))).)).)))....)).... ( -31.60)
>consensus
GCCUGCGCA_______CCGGGCCAUUUGACUUCAUUUGAUUUCGAGAGCAGAUGCCAGAUGCCAAUUGGCGAUUGCCAUUCAUUUGGCACUCCACCGACACGGCCACCUCCUCC
((....))...........((((.(((((..((....))..))))).......((((((((.....((((....))))..)))))))).............))))......... (-25.34 = -25.78 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:24 2006