| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,905,952 – 1,906,059 |
| Length | 107 |
| Max. P | 0.578043 |
| Location | 1,905,952 – 1,906,059 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.03 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -24.50 |
| Energy contribution | -24.06 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1905952 107 - 22224390 GUUCCUUUUU-------GUUUUUGUGAUUAUGUCAAGUGCUGAGUUAGGGCAACCUGUAACCCUUUUAUUCUCUACCUGAUCUCGCGA------UUCAAAAGCAUUAGUCAUGAAAGCUG ..........-------(((((..((((((.((((.(((..((((.((((..........))))...))))..))).))))...((..------.......))..))))))..))))).. ( -25.20) >DroSec_CAF1 1442 107 - 1 GUUUGUUUUU-------GUUUUUGUGAUUAUGUCAAGUGCUGAGUUGGGGCAACCUGUAACCCUUUUAUUCUCUACCUGAUCUCGCGA------UUCAAAAGCAUUAGUCAUGAAAGCUG ..........-------(((((..((((((.((((.(((..((((.((((..........))))...))))..))).))))...((..------.......))..))))))..))))).. ( -25.20) >DroYak_CAF1 1755 120 - 1 UUUUGUUUUUGUGUGUUGUUCUUGUGAUUAUGUCAAGUGCUGAGUUUGGGCAACCUGUAACCCAUUUAUUCUCUACCUGAUCUCGCGCUCGCGCCUCAAAAGCAUUAGUCAUGAAAACUG ....(((((..((...((((.(((.(.....((((.(((..((((.((((..........))))...))))..))).))))...(((....)))).))).)))).....))..))))).. ( -27.30) >consensus GUUUGUUUUU_______GUUUUUGUGAUUAUGUCAAGUGCUGAGUUAGGGCAACCUGUAACCCUUUUAUUCUCUACCUGAUCUCGCGA______UUCAAAAGCAUUAGUCAUGAAAGCUG .................(((((..((((((.((((.(((..((((.((((..........))))...))))..))).))))...((...............))..))))))..))))).. (-24.50 = -24.06 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:05 2006