Locus 6849

Sequence ID X_DroMel_CAF1
Location 17,069,096 – 17,069,187
Length 91
Max. P 0.839304
window11212

overview

Window 2

Location 17,069,096 – 17,069,187
Length 91
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 68.87
Mean single sequence MFE -31.90
Consensus MFE -16.33
Energy contribution -18.03
Covariance contribution 1.70
Combinations/Pair 1.17
Mean z-score -1.66
Structure conservation index 0.51
SVM decision value 0.74
SVM RNA-class probability 0.839304
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17069096 91 - 22224390
AUCUGCGGGAAUCUGCUGGAAUCUGCCGGAAUCUG-------CCACGGCAGCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC--------------AAUUUCCCAUUGAC
......(((((((((.(((...((((((.......-------...))))))))))))).(((((((((....)))))))))...--------------...)))))...... ( -34.60)
>DroPse_CAF1 83759 95 - 1
CCCAGCACUCAACAACCAGC---------GACCCG-------CCAAUCCAU-UCCGGAAUUCUUGGAAGUACUUCUCGGGCAGCGAUCCCGAAGCGAAGAUUUCCCAUCGGC
....((............))---------.....(-------((..(((..-...)))......((((((.(((((((((.......)))))...))))))))))....))) ( -22.40)
>DroSec_CAF1 68570 78 - 1
AUCUGCGGGAAUCUGCUGGAAUC--------------------CACGGCAUCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC--------------AAUUUCCCAUUGAC
......(((((...(((((((((--------------------(.((.......)))))))))(((((....)))))...))).--------------...)))))...... ( -28.90)
>DroSim_CAF1 59899 78 - 1
AUCUGCGGGAAUCUGCUGGAAUC--------------------CACGGCAUCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC--------------AAUUUCCCAUUGAC
......(((((...(((((((((--------------------(.((.......)))))))))(((((....)))))...))).--------------...)))))...... ( -28.90)
>DroEre_CAF1 69022 96 - 1
AUCUGCGGGAAUCUGCCGGAAUCCA-CGGCAUCC-ACGGCAUCCGCGGCAUCCGCGGGAUUCUGGGAAGCACUUAACGGGGGCC--------------AAUUUCCCAUUGAC
......(((((..(((((.......-)))))...-..(((.(((((((...))))))).(((((..((....))..))))))))--------------...)))))...... ( -36.00)
>DroYak_CAF1 72528 98 - 1
AUCUGCGGGAAUUUGCUGGAAUCUGUCGGAAUCUGGCGGAAUUCACGGCAUCUACGGGAUUCUGGGAAGCACUUCCCGGAGGCC--------------AAUUUCCCAUUGAC
......(((((..((((((((((((((((...))))))).)))).)))))......((.(((((((((....))))))))).))--------------...)))))...... ( -40.60)
>consensus
AUCUGCGGGAAUCUGCUGGAAUC_______AUC_________CCACGGCAUCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC______________AAUUUCCCAUUGAC
.((...(((((..(((((...........................)))))......((.(((((((((....))))))))).)).................)))))...)). (-16.33 = -18.03 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:23 2006