Locus 6848

Sequence ID X_DroMel_CAF1
Location 17,061,527 – 17,061,619
Length 92
Max. P 0.576159
window11211

overview

Window 1

Location 17,061,527 – 17,061,619
Length 92
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.55
Mean single sequence MFE -17.82
Consensus MFE -11.13
Energy contribution -10.80
Covariance contribution -0.33
Combinations/Pair 1.23
Mean z-score -1.73
Structure conservation index 0.62
SVM decision value 0.09
SVM RNA-class probability 0.576159
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17061527 92 - 22224390
CUUACAGCUUGA------------GGUAUAAUCGAAUAAUACGAUUAUGAAUAUUCAU--GCCACAAGAACGGGUAUGUAAAUGCCAGACUCUUAAACAAACAAGA--
......((.(((------------(.((((((((.......))))))))....)))).--))...((((...(((((....)))))....))))............-- ( -18.60)
>DroSec_CAF1 61580 92 - 1
CUUACAGCUUUA------------GGUAUAAUCGAAUAAUACGAUUGUGAAUAUUCAU--ACCACAAGAACGGGUAUGUAAAUGCCAAAUACUUAAACAAACAAAA--
......(.((((------------(((((............((.(((((.........--..)))))...))(((((....)))))..))))))))))........-- ( -16.10)
>DroSim_CAF1 49486 92 - 1
CUUACAGCUUUA------------GGUAUAAUCGAAUAAUACGAUUGUGAAUAUUCAU--ACCACAAGAACGGGUAUGUAAAUGCCAAAUACUUAAACAAACAAAA--
......(.((((------------(((((............((.(((((.........--..)))))...))(((((....)))))..))))))))))........-- ( -16.10)
>DroEre_CAF1 61918 94 - 1
CUUACAGCAUGA------------GGUAUAAUCGAAUAAGACGAUUAUAAAUAUUCAU--ACCACAAGAACGGGUAUGUAAAUGCCAGACACUCAAACAAACUUAAAG
.........(((------------(.((((((((.......))))))))......(((--(((.(......))))))).............))))............. ( -16.90)
>DroYak_CAF1 65469 94 - 1
CUUACAGCUUGG------------GGUAUAAUCGAAUAAGACGAUUAUGAAUAUUCAU--ACCACAAGAACGGGUAUGUAAAUGCCAGAUGCUCAAACAAACUUAAAA
.....(((....------------((((((((((.......))))))).......(((--(((.(......))))))).....)))....)))............... ( -17.60)
>DroPer_CAF1 73177 106 - 1
CUUACAGCUUGAAAUAGUGGCUGAACCAUAAUCGAAUAAUGCGAUUAUGAAUAUUCAUCGACGGC--AAACGAGUAUGUAAAUGCCAAAUACACACACGGACUUGCGA
....(((((.........)))))...((((((((.......))))))))..............((--((.((.((.((((.........)))).)).))...)))).. ( -21.60)
>consensus
CUUACAGCUUGA____________GGUAUAAUCGAAUAAUACGAUUAUGAAUAUUCAU__ACCACAAGAACGGGUAUGUAAAUGCCAAAUACUCAAACAAACAAAA__
..........................((((((((.......)))))))).......................(((((....)))))...................... (-11.13 = -10.80 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:22 2006