Locus 6844

Sequence ID	X_DroMel_CAF1
Location	17,039,905 – 17,039,997
Length	92
Max. P	0.532703

overview

Window 5

Location	17,039,905 – 17,039,997
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	90.65
Mean single sequence MFE	-29.46
Consensus MFE	-19.68
Energy contribution	-20.08
Covariance contribution	0.40
Combinations/Pair	1.12
Mean z-score	-2.64
Structure conservation index	0.67
SVM decision value	-0.00
SVM RNA-class probability	0.532703
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17039905 92 - 22224390
GCGUUACGGAUUCGCAAAAGGUUCGGGUAAUUCCCCAAUUAGCACUGAGGGAAAUAUUUGGAGCUGUUAACGUGAUAUGAUCUGAAACGCAG
(((((.(((((((((...((.((((((((.(((((((........)).))))).)))))))).))......))))....))))).))))).. ( -30.40)
>DroSec_CAF1 39742 92 - 1
GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGGGAAAUAUUUGGAGCUGUUGACGUGAUAUGAUCUGUAACGCAG
(((((((((((((((((..((((((((((.(((((((........)).))))).))))).))))).))).))......)))))))))))).. ( -36.20)
>DroSim_CAF1 32882 92 - 1
GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGCGAAAUAUUUGGAGCUGUUGACGUGAUAUGAUCUGUAACGCAG
(((((((((((((((((..((((((((......))).....((.....))..........))))).))).))......)))))))))))).. ( -32.70)
>DroEre_CAF1 39995 92 - 1
GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGAGAAAUAUUUCGAUCUGCAAAUGUGAUGUGAUCUGAAACGCAG
(((((.(((((.((((........(((......))).....(((.(((((......)))))...)))........))))))))).))))).. ( -26.00)
>DroYak_CAF1 41673 92 - 1
GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGCGAAAUAUUUUGAAUUGUUUAUGUGUAAUGAUAUUAAACGCAG
(((((..((.(((....)))..))(((......))).....(((((((((((...........))))))).))))..........))))).. ( -22.00)
>consensus
GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGCGAAAUAUUUGGAGCUGUUAACGUGAUAUGAUCUGAAACGCAG
(((((.(((((((((....((((((((......)))..(((....)))............)))))......)))....)))))).))))).. (-19.68 = -20.08 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:17 2006