| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,037,497 – 17,037,587 |
| Length | 90 |
| Max. P | 0.602083 |
| Location | 17,037,497 – 17,037,587 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 84.50 |
| Mean single sequence MFE | -40.32 |
| Consensus MFE | -28.94 |
| Energy contribution | -28.67 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17037497 90 - 22224390 GCCAACAUAGCCGGCUCCACCGGCCAGGACAGGAGUGGCAACCGGGGUGGACACCGAU-GUGACCACCGGUGUAACCACGGCGGAGGUGGA (((.........)))((((((.((((.........))))..(((..((((((((((.(-(....)).))))))..))))..))).)))))) ( -36.90) >DroPse_CAF1 44569 90 - 1 GCCCACAUAGCCAGCUCCGCCAGUCAGGAUGGGGCUGGCCACGGGUGUGGACACUGAG-GUGACCACAGGGGUAACCACAGCCGAUGUGGA ..((((((.((((((((((((.....)).))))))))))..(((.(((((.(((....-)))(((.....)))..))))).))))))))). ( -48.70) >DroSim_CAF1 30494 90 - 1 UCCCACAUAGCCGGCUCCACCGGCCAGGACAGGAGUGGCAACCGGCGUGGACACCGAA-GUGACCACUGGGGUAACCACGGCCGAGGUGGA ..((((...((((.((((.((.....))...))))))))...((((((((..(((..(-((....)))..)))..)))).))))..)))). ( -39.10) >DroEre_CAF1 37604 90 - 1 GUUCACAUAGCCGGCUCCACCGGCCAGGACAGGAGUGGCAACCGGCGUGGACACUGAA-GUGACCACCGGUGUAACCACGGCGGAGGUGGA .(((((...((((.((((.((.....))...))))))))..(((.(((((((((((..-........))))))..))))).)))..))))) ( -38.70) >DroYak_CAF1 39200 90 - 1 GCUCACAUAGCCAGCUCCACCGGCCAGGACAGGAGUGGCAACCGGCGUGGACACCGAA-GUGACCACCGGUGUGACCACGGCGGAGGUGGA ..((((...((((.((((.((.....))...))))))))..(((.(((((((((((..-........))))))..))))).)))..)))). ( -40.70) >DroPer_CAF1 42643 91 - 1 GCCCACAUAGCCAGCUCCGCCAGUCAGGAUGUGGCUGGCCACGGGUGUGGACACUGAGGGUGAUCACAGGGUUAACCACAGCCGAUGUGAA ...(((((.((((((..((((.....)).))..))))))..(((.(((((((.(((.((....)).))).))...))))).)))))))).. ( -37.80) >consensus GCCCACAUAGCCAGCUCCACCGGCCAGGACAGGAGUGGCAACCGGCGUGGACACCGAA_GUGACCACCGGGGUAACCACGGCCGAGGUGGA ..((((...((((.((((.((.....))...))))))))..(((.(((((.(((.....))).((...)).....))))).)))..)))). (-28.94 = -28.67 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:16 2006