Locus 6842

Sequence ID X_DroMel_CAF1
Location 17,028,827 – 17,028,932
Length 105
Max. P 0.778027
window11203

overview

Window 3

Location 17,028,827 – 17,028,932
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -22.62
Consensus MFE -18.90
Energy contribution -19.46
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.61
Structure conservation index 0.84
SVM decision value 0.55
SVM RNA-class probability 0.778027
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17028827 105 - 22224390
AUAUUGUGAAUUGUGAACUUAAUAUAGACGUGUGUCAGGGUGGGUCAAUAGGUUGGAAAUCCAAUGAAACCAAGUAGUAUUCUUAGCAAUUUACAAAUAUAAAAU
...(((((((((((......(((((.(((....)))..(((...(((.....((((....))))))).))).....)))))....)))))))))))......... ( -22.00)
>DroSec_CAF1 33612 105 - 1
AUAUUGUGAAUUGUGAACUUAAUAUAGACGUGUGUCAGGGUGGGUCAAUAGGUUGGAAAUCCAAUGAAACCAAGUAGUAUUCUUAGCAAUUUACAAAUAUAAAAU
...(((((((((((......(((((.(((....)))..(((...(((.....((((....))))))).))).....)))))....)))))))))))......... ( -22.00)
>DroSim_CAF1 26874 105 - 1
AUAUUGUGAAUUGUGAACUUAAUAUAGACGUGUGUCAGGGUGGGUCAAUAGGUUGGAAAUCCAAUGAAACCAAGUAGUAUUCUUAGCAAUUUACAAAUAUAAAAU
...(((((((((((......(((((.(((....)))..(((...(((.....((((....))))))).))).....)))))....)))))))))))......... ( -22.00)
>DroEre_CAF1 33918 105 - 1
AUAUUGUGAAUUGUGAACUUAAUAUAGACGUGUGUCAGGGUGGGUCAAUAGGCUGGAAAUCCAAUGAAUCCAAGUAGUAUUCUUGGCAGUUUACAAAUGUAAAAU
...(((((((((((.((...(((((.(((....))).((((.((((....))))((....)).....)))).....))))).)).)))))))))))......... ( -23.50)
>DroYak_CAF1 35040 105 - 1
AUAUUGUGAAUUGUGAACAUAAUAUAGACGUGUGUCAGGGUGGGUCAAUAGGUUGGAAAUCAAAUGAAUCCAAGUUGUAUUCUUGGCAGUUUACAAUUAUAAAAU
...((((((.((((((((...((((....))))(((((((.......((((.(((((..((....)).))))).))))..))))))).))))))))))))))... ( -23.60)
>consensus
AUAUUGUGAAUUGUGAACUUAAUAUAGACGUGUGUCAGGGUGGGUCAAUAGGUUGGAAAUCCAAUGAAACCAAGUAGUAUUCUUAGCAAUUUACAAAUAUAAAAU
...(((((((((((.((...(((((.(((....)))..(((...(((.....((((....))))))).))).....))))).)).)))))))))))......... (-18.90 = -19.46 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:15 2006