Locus 6840

Sequence ID X_DroMel_CAF1
Location 17,022,702 – 17,022,798
Length 96
Max. P 0.998385
window11200

overview

Window 0

Location 17,022,702 – 17,022,798
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 95.07
Mean single sequence MFE -24.69
Consensus MFE -24.18
Energy contribution -23.94
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.82
Structure conservation index 0.98
SVM decision value 3.09
SVM RNA-class probability 0.998385
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17022702 96 - 22224390
AAGACGUGCAUCUCUUGCAUCUGUUAUUUCCAUUAGACUGGGGGCCGUGGAAGUCGCGGAACUCUUUCCCAACAUCCAUUCAAGC--CCUCCCCCAAA
..((((((((.....)))))..)))..............((((((.(((((.((.(.((((....))))).)).)))))....))--))))....... ( -25.50)
>DroSec_CAF1 27472 98 - 1
AAGACGUGCAUCUCUUGCAUCUGUUAUUUCCAUUAGACUGGGGGCCGUGGAAGUCGCGGAACUCUUUCCCAACAUCCAUCCAUCCAUCCUCCCCCAAA
..((((((((.....)))))..))).............((((((..(((((.((.(.((((....))))).)).)))))...........)))))).. ( -24.32)
>DroSim_CAF1 21460 98 - 1
AAGACGUGCAUCUCUUGCAUCUGUUAUUUCCAUUAGACUGGGGGCCGUGGAAGUCGCGGAACUCUUUCCCAACAUCCAUCCAUCCAUCCUCCCCCAAA
..((((((((.....)))))..))).............((((((..(((((.((.(.((((....))))).)).)))))...........)))))).. ( -24.32)
>DroEre_CAF1 27814 96 - 1
UAGACGUGCAGCUCUUGCAUCUGUUAUUCCCAUUAGACUGGGGGCCAUGGAAGUCGCGGAACUCUUUCCCAACAUCCAUCCAAGC--CCUCCCCCAAA
..(((((((((...))))))..)))..............((((((.(((((.((.(.((((....))))).)).)))))....))--))))....... ( -24.10)
>DroYak_CAF1 28866 96 - 1
AAGACGUGCAUCUCUUGCAUCUGUUAUUCCCAUUAGACUGGGGGCCAUGGAAGUCGCGGAACUCUUUCCCAACAUCCAUCCAAGC--CCUCCCCCAAA
..((((((((.....)))))..)))..............((((((.(((((.((.(.((((....))))).)).)))))....))--))))....... ( -25.20)
>consensus
AAGACGUGCAUCUCUUGCAUCUGUUAUUUCCAUUAGACUGGGGGCCGUGGAAGUCGCGGAACUCUUUCCCAACAUCCAUCCAAGC__CCUCCCCCAAA
..((((((((.....)))))..))).............((((((..(((((.((.(.((((....))))).)).)))))...........)))))).. (-24.18 = -23.94 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:12 2006