Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,905,759 – 1,905,878 |
Length | 119 |
Max. P | 0.949337 |
Location | 1,905,759 – 1,905,878 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -38.67 |
Consensus MFE | -35.95 |
Energy contribution | -36.73 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.02 |
Mean z-score | -2.62 |
Structure conservation index | 0.93 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1905759 119 + 22224390 UUCGCUCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUUAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUUGCUGG-GGUUAUUCAUGAAUCGCUGUGUUUUUUAUUGUUGC .((((((.....))))))(((((((((((((((((((((((((((.(((..((....))))).))))).((((((....)))))-))))))))))...)))))....))))))))..... ( -36.50) >DroSec_CAF1 1249 119 + 1 UUCGCGCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUGAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUUGCUGG-GGUUAUUCAUGAAUCGCUGUGUUUUUUAUCGUUGC .((((.(.....).))))(((((((((((((((((((((((((((((((..((....))))))))))).((((((....)))))-))))))))))...)))))....))))))))..... ( -38.60) >DroYak_CAF1 1555 120 + 1 UUCGCUCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUGAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUCGCAGGGGGUUAUUCAUGAAUCGCUGUGUUUUUUAUUGUUGC .((((((.....))))))((((((((((((((((...((((((((((((..((....))))))))))))))...))))))).((.((((.......)))).))...)))))))))..... ( -40.90) >consensus UUCGCUCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUGAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUUGCUGG_GGUUAUUCAUGAAUCGCUGUGUUUUUUAUUGUUGC .((((((.....))))))(((((((((((((((((((((((((((((((..((....)))))))))))..(((((....)))))..)))))))))...)))))....))))))))..... (-35.95 = -36.73 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:04 2006