Locus 6839

Sequence ID X_DroMel_CAF1
Location 17,021,350 – 17,021,441
Length 91
Max. P 0.939128
window11199

overview

Window 9

Location 17,021,350 – 17,021,441
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 95.60
Mean single sequence MFE -16.49
Consensus MFE -14.77
Energy contribution -14.77
Covariance contribution -0.00
Combinations/Pair 1.05
Mean z-score -2.35
Structure conservation index 0.90
SVM decision value 1.30
SVM RNA-class probability 0.939128
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17021350 91 + 22224390
AUUUUUCUACGUGCCGAUAUACACACAUGCCAAAUUCAAUCACAAUCUCUUUUGGCAUUCCUCCAGUUCGAUACCACACUGGUUCGCCCUG
..........(((........)))..((((((((................)))))))).....(((..(((.(((.....))))))..))) ( -17.69)
>DroSec_CAF1 26128 91 + 1
AUUUCUCUACGUGCCGAUAAACACACAUCCCAAAUUCAAUCACAAUCUCUUUUGGCAUUCCUCCAGUUCGAUACCACUCUGGUUUGCCCUG
..........(((((((..................................))))))).....(((..(((.(((.....))))))..))) ( -12.08)
>DroSim_CAF1 20111 91 + 1
AUUUCUCUACGUGCCGAUAAACACACAUGCCAAAUUCAAUCACAAUCUCUUUUGGCAUUCCUCCAGUUCGAUACCACACUGGUUUGCCCUG
..........(((........)))..((((((((................)))))))).....(((..(((.(((.....))))))..))) ( -15.59)
>DroEre_CAF1 26621 91 + 1
AUUUUUUUACGUGCCGAUAUACACACAUGCCAAAUUCAAUCACAAUCUCUUUUGGCAUUCCUCCAGUGCGAUACCACACUGGUUCGCCCUG
..........(((........)))..((((((((................)))))))).....(((.((((.(((.....))))))).))) ( -20.59)
>consensus
AUUUCUCUACGUGCCGAUAAACACACAUGCCAAAUUCAAUCACAAUCUCUUUUGGCAUUCCUCCAGUUCGAUACCACACUGGUUCGCCCUG
..........(((........)))..((((((((................)))))))).....(((..(((.(((.....))))))..))) (-14.77 = -14.77 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:11 2006