Locus 6836

Sequence ID X_DroMel_CAF1
Location 17,010,976 – 17,011,076
Length 100
Max. P 0.803846
window11195

overview

Window 5

Location 17,010,976 – 17,011,076
Length 100
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 87.81
Mean single sequence MFE -22.79
Consensus MFE -18.45
Energy contribution -19.96
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.81
SVM decision value 0.63
SVM RNA-class probability 0.803846
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17010976 100 - 22224390
AUUCAUUUCGCACAAGUUUAUCUUAGUCCGCUCACCACU--------CAAUCAGGUGAGUCAUCAAUCAAGUCGUAAGUUUCCGUUCUUGAGCAAUUAGAUCUUUGCC
.........(((.(((((((.........(((((((...--------......)))))))......(((((.((........))..))))).....)))).)))))). ( -18.30)
>DroSec_CAF1 15868 100 - 1
AUUCAUUUCGCACAGGUUUAUCUCAGCCCGCUCACCACU--------CAAUCAGGUGAGUCAUCAAUCAAGUCGUUAGUUUCCGUUCUUGAGCAAUUAGAUCUUUGCC
.........(((.(((((((.....((..(((((((...--------......)))))))......(((((.((........))..)))))))...))))))).))). ( -23.90)
>DroEre_CAF1 16394 108 - 1
AUUCAUUUUGCCCAGGUUUAUCUAAACCGGCUCACCACUCAAUCACUCAAUCAGGUGAGUCAUCAAUCAAGUCGUAAGAUUCCUCUCUUGAGCAAUUAGAUCUUUGCC
..((...((((.(((((((....)))))((((((((.................))))))))........((((....)))).......)).))))...))........ ( -23.93)
>DroYak_CAF1 17458 108 - 1
AUUCAUUUCGCAGAGGUUUAUCUUAACCGGCUCACCACUCAAUCACUCAAUCAGGUGAGUCAUCAAUCAAGUCGUAGGUUUCCGUUCUUGAGCAAUUAGAUAUUUGCC
.........(((((((((......))))((((((((.................)))))))).....(((((.((........))..)))))...........))))). ( -25.03)
>consensus
AUUCAUUUCGCACAGGUUUAUCUUAACCCGCUCACCACU________CAAUCAGGUGAGUCAUCAAUCAAGUCGUAAGUUUCCGUUCUUGAGCAAUUAGAUCUUUGCC
.........(((.(((((((........((((((((.................)))))))).....(((((.((........))..))))).....))))))).))). (-18.45 = -19.96 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:08 2006