Locus 6834

Sequence ID X_DroMel_CAF1
Location 17,003,050 – 17,003,145
Length 95
Max. P 0.742460
window11192

overview

Window 2

Location 17,003,050 – 17,003,145
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 96.49
Mean single sequence MFE -21.43
Consensus MFE -19.53
Energy contribution -19.87
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.91
SVM decision value 0.45
SVM RNA-class probability 0.742460
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17003050 95 - 22224390
AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGCCAAACACUCGCAAAAAAUAAACAAACAACAAAGAUACAUUCCGAU
...((((...((....(((((((((.....)))))))))....))...))))........................................... ( -21.80)
>DroSec_CAF1 8044 95 - 1
AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGCCAAACACUCGCAAAAAAUAAACAAACAACAAAGAUACAUUCCGAU
...((((...((....(((((((((.....)))))))))....))...))))........................................... ( -21.80)
>DroYak_CAF1 8688 95 - 1
AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGGCAAACACUCGCAAAAAAUAAGUAAAUAAAAAAGAUACAUUCCGAU
......(((((((...(((((((((.....))))))))).)))......((........)).........))))..................... ( -20.70)
>consensus
AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGCCAAACACUCGCAAAAAAUAAACAAACAACAAAGAUACAUUCCGAU
...((((...((....(((((((((.....)))))))))....))...))))........................................... (-19.53 = -19.87 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:05 2006