| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,000,537 – 17,000,635 |
| Length | 98 |
| Max. P | 0.994935 |
| Location | 17,000,537 – 17,000,635 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.14 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -8.22 |
| Energy contribution | -8.58 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.38 |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.994935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17000537 98 - 22224390 GCAGCAG-UA-----AU-GUAAAG---------AUUACAUUCGAUUUCCUUU------CCAGUUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAAUCGAACCGAUAUU ((((.((-.(-----((-(((...---------..)))))).........((------(((..((((.(((((((......))))))))))))))))..)))))).((((...))))... ( -21.90) >DroSec_CAF1 5675 86 - 1 GCAGCUG-UA-----AU-CUAAAC---------AUUGCAUUAGAUUUCCUUC------CCCGUUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAAU------------ ((((...-.(-----((-((((..---------......)))))))......------.((((.(((.(((((((......))))))))))))))......))))...------------ ( -19.80) >DroSim_CAF1 1066 92 - 1 GCAGCAG-UA-----AU-CUAAAC---------AUUGCAUUAGAUUUCUUUCUAAUCUCCCGUUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAAU------------ ((((..(-((-----((-......---------)))))((((((......))))))...((((.(((.(((((((......))))))))))))))......))))...------------ ( -21.70) >DroEre_CAF1 5430 108 - 1 GAAGUAGGCA-----AUGAUAAACUCCUCCUUGAUUGCUUUAGAUUUCCUUU------CUAGUGAAAACUGAAACCCAAUCGUUUUAGUACGUGGAACCCUCUGCAAUCGAACC-AUAUU .(((.(((..-----..........))).)))((((((...((..(((((((------(....))))((((((((......))))))))....))))..))..)))))).....-..... ( -22.40) >DroYak_CAF1 5459 110 - 1 AAAGUAUAGAAAGAUAUGCUAAACUCCUUCUUGAA---UUUAGAUUUUCUUU------CUAGUUUAAACUGAAACCCAAUCGUUUUAGUUCACGGAACCCUCUGCAAUCGAACC-AUAUU ......((((((((....(((((.((......)).---)))))....)))))------)))((((.(((((((((......)))))))))..((((....)))).....)))).-..... ( -22.70) >consensus GCAGCAG_UA_____AU_CUAAAC_________AUUGCAUUAGAUUUCCUUU______CCAGUUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAAUCGAACC_AUAUU ...((((...........................................................(((((((((......)))))))))...((...)).))))............... ( -8.22 = -8.58 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:04 2006