Locus 6830

Sequence ID X_DroMel_CAF1
Location 16,985,945 – 16,986,064
Length 119
Max. P 0.568690
window11186

overview

Window 6

Location 16,985,945 – 16,986,064
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 89.92
Mean single sequence MFE -42.02
Consensus MFE -32.06
Energy contribution -32.34
Covariance contribution 0.28
Combinations/Pair 1.15
Mean z-score -1.54
Structure conservation index 0.76
SVM decision value 0.07
SVM RNA-class probability 0.568690
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16985945 119 - 22224390
AUGUGACCAGCAAAGCGGACAUUAGCAAGGCGGCCGAUCCCUUCAAGGAUCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCUCAAGCUGGAAGCAGGCGUAUGUGGUCAGAAGC
.(.((((((.((..((.(...(((((.((((.((((((((......))))).......((...))..............))).))))...)))))...)..))...)))))))).)... ( -35.10)
>DroSec_CAF1 4050 119 - 1
AUGUGACCAGCAAAGUGGACAUUGGCAAGGUGGCGGAUCCAUUCAAGGACCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCGCCAGCUGGAAACAGGCGUAUGUGGUCAUAAGC
.((((((((.((..((.....(((((...((.(.((.(((......))))).).))..(((((.(..(........)..)))))).)))))(((....)))))...))))))))))... ( -41.10)
>DroSim_CAF1 5411 119 - 1
AUGUGACCAGCAAAGUGGACAUUGGCAAGGUGGCGGAUCCAUUCAAGGACCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCGCCAGCUGGAAACAGGCGUAUGUGGUCAUAAGC
.((((((((.((..((.....(((((...((.(.((.(((......))))).).))..(((((.(..(........)..)))))).)))))(((....)))))...))))))))))... ( -41.10)
>DroEre_CAF1 2219 119 - 1
AUGUGACCAGCAAGCUGGACAUUAGCAAGGCGGCAGAUCCCUUCAAGGAUCUCGACGAGCCGCGCAUCAAGGAGAAGGAGGUGGCCGCCAGCUGGAAGCAGGCGCAUGUGGCCGGAAAC
.(((..(((((..((((.....))))..((((((..((((((((...((((.((......)).).))).....))))).))).)))))).)))))..)))(((.......)))(....) ( -45.10)
>DroYak_CAF1 2354 119 - 1
AUGUGACCAGCAAGCUGGACAUCAGCAAGGCGGCAGAUCCCUUCAAGGAUCUGGACGAGCCGCGCAUCAAGGAGAAGGAGGUGGCCGCCAGCUGGAAGCAGGCGUAUGUGGCCGGUAAC
.(((..(((((..((((.....))))..((((.(((((((......))))))).....(((((.(..(........)..)))))))))).)))))..)))(((.......)))...... ( -47.70)
>consensus
AUGUGACCAGCAAAGUGGACAUUAGCAAGGCGGCAGAUCCCUUCAAGGAUCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCGCCAGCUGGAAGCAGGCGUAUGUGGUCAGAAGC
.(((..(((((...((((.((((.((...(((((((((((......))))))......))))))).((.....))....)))).))))..)))))..)))(((.......)))...... (-32.06 = -32.34 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:00 2006