Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,905,329 – 1,905,445 |
Length | 116 |
Max. P | 0.527519 |
Location | 1,905,329 – 1,905,445 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.92 |
Mean single sequence MFE | -27.88 |
Consensus MFE | -21.65 |
Energy contribution | -22.71 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.78 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1905329 116 + 22224390 AUCUUAUCAAAAAAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCUGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGC----UCUCGCUCUCUCCUUCCUCUUGG .............(((..(((((((((.(((......)))))))...)))))......((((..(((((...((....))..)))))..))))----....)))................ ( -25.60) >DroSec_CAF1 814 120 + 1 AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCGGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGCACUCUCUCGCUCUCUGCUGCCUCUUGG ...........(((((..(((((((((.(((......)))))))...)))))......((((..(((((...((....))..)))))..))))........))))).............. ( -30.60) >DroSim_CAF1 1014 120 + 1 AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCGGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGCACUCUCUCGCUCUCUCCUGCCUCUUGG ...........(((((..(((((((((.(((......)))))))...)))))......((((..(((((...((....))..)))))..))))........))))).............. ( -30.60) >DroYak_CAF1 1143 106 + 1 AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUUGCGAUUUGGUAAUCCUCGGCGAUU---------CUAACGAUCGCAAGG-----GCUCUCUUGCUCUCUCCUUACUCUUGG .......(((.(((((..(((((..((.((((...)))).)).....))))).(((..(((((.---------(....)))))).)))-----))))).))).................. ( -24.70) >consensus AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCGGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGCACUCUCUCGCUCUCUCCUGCCUCUUGG ...........(((((..(((((((((.(((......)))))))...)))))..((((((((((..............)))))))))).............))))).............. (-21.65 = -22.71 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:01 2006