Locus 6828

Sequence ID X_DroMel_CAF1
Location 16,982,412 – 16,982,532
Length 120
Max. P 0.638149
window11180

overview

Window 0

Location 16,982,412 – 16,982,532
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -28.85
Consensus MFE -15.93
Energy contribution -17.43
Covariance contribution 1.50
Combinations/Pair 1.16
Mean z-score -1.90
Structure conservation index 0.55
SVM decision value 0.22
SVM RNA-class probability 0.638149
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16982412 120 - 22224390
CAUGCGAAUUUCAACUAUCGCCACCCGUUGUGACUGGCAAAACCGCGAAAUGCCGCAUAUCGAUAGAAAGUUCGAAAUUUGUCAUUAAAAAAGUGGCUUAAAACUAAUAGUAUGCCUGAA
((((((((((((((((.((((((..(.....)..))))......(((......))).........)).)))).)))))))((((((.....))))))............)))))...... ( -26.80)
>DroSim_CAF1 9511 120 - 1
CACGCAAAUUAAAACUAUCGUCACUCGUUGUGACUGGCAAAACCGCCAAAUGCCGCAUAUCGAUAGAAGGUUCAGACUUUGUUCUUAAAAAAGUGGCUUAAAACUAUUAGUGUGCCUUAA
...(((.............(((((.....)))))((((......))))..))).((((((..((((.(((((...(((((.........))))))))))....))))..))))))..... ( -28.70)
>DroEre_CAF1 10323 109 - 1
CACGCGAAUGGCAACUAUCGGUCGCCGUUGUGACUGGCAAAUCCGCCAAAUGCCGCAUAUCGAUAGAAAGACUAGCCAUUGC-----------UGGCAUAAAAUCCACAGCUUGCCCUAA
...((((..(((.((.....)).)))((((((..((((......)))).((((((((......(((.....))).....)))-----------.)))))......))))))))))..... ( -32.50)
>DroYak_CAF1 10862 120 - 1
CAAGCGAAUGGCAACUAUCGUUCCCCGUUGUGACUGGCAAACCCGCCAAAUUCCGCAUAUCGAUAGAAAGUCCAAACAUUUCCAUUAAAAAAGUGGUCUAAUAUCAAAAGACUGCCAUAA
.......(((((..((((((.....((..((...((((......)))).))..)).....))))))..((((.....(((.(((((.....)))))...))).......))))))))).. ( -27.40)
>consensus
CACGCGAAUGGCAACUAUCGUCACCCGUUGUGACUGGCAAAACCGCCAAAUGCCGCAUAUCGAUAGAAAGUCCAAACAUUGCCAUUAAAAAAGUGGCUUAAAACCAAUAGUAUGCCUUAA
(((((.........((((((.....((..((...((((......)))).))..)).....))))))..............((((((.....))))))............)))))...... (-15.93 = -17.43 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:55 2006