| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,980,527 – 16,980,631 |
| Length | 104 |
| Max. P | 0.944784 |
| Location | 16,980,527 – 16,980,631 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 75.78 |
| Mean single sequence MFE | -17.63 |
| Consensus MFE | -15.94 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16980527 104 - 22224390 AGAGCGAACACAAGGUUUUAAUGUCCUAGUGCUUGAAGAUAUC-AAAGCCUCUUCUUGUUCUCCGGGAACUUAAAACCACAUUACAAAACCAUU-AUAAAGCAUAU ...(((....)..((((((((..(((..(.((..(((((....-......)))))..))...)..)))..))))))))................-.....)).... ( -19.90) >DroPse_CAF1 7041 101 - 1 AGAGUAACCCACAAGUUUUAAUAUCCUAGUGCUUGACGAUACAUAUCCCCUCAUCUUGCUCUCUUGGAACUUAAAACUACACCUGCAACCAAUU-----CGGAUAU .............((((((((..(((.((.((..((.((...........)).))..))...)).)))..))))))))..........((....-----.)).... ( -14.00) >DroGri_CAF1 6216 100 - 1 AGAGCAAAUUU--GGUUUCAAUAUCCUAGUGUUUGAAGCGAC---ACUCCUCUUCCUACUCUCUUGGAACUUGAAACGACAAUUGCACAUUAAUCAUAAUUAAU-A ...((((.(.(--.(((((((..(((.((.((..((((.(..---....).))))..))...)).)))..))))))).).).))))..((((((....))))))-. ( -20.50) >DroSec_CAF1 7969 104 - 1 AGAGCGAACCCAAGGUUUUAAUGUCCUAGUGCCUGAAGAUAUA-AAAUCCUCUUCUUGUUUUCCUGGAAUUUAAAACCACACUACAAAACCAUU-AUAAAGCAUAU ...(((....)..((((((((..(((..(.((..(((((....-......)))))..))...)..)))..))))))))................-.....)).... ( -17.60) >DroEre_CAF1 8373 103 - 1 AGAGUAAUCCCAAGGUUUUAAUAUCCUAGUGCCUGAAGAUAAC-AAAGCCUCUUCUCGUUCUCCUGGAACUUAAAACCACACGACAAAACCACU-AUAAAGCAU-U .((....))....((((((((..(((.((.((..(((((....-......)))))..)).))...)))..))))))))................-.........-. ( -17.10) >DroYak_CAF1 8958 104 - 1 AGAGUAACCCCAAGGUUUUAAUAUCCUAGUGCCUGAAGAUCAC-AAAGCCUCUUCUCGUUCUCCUGGAACUUAAAACCACACGACAAAACCAUU-AUAAAGCAUAU .............((((((((..(((.((.((..(((((....-......)))))..)).))...)))..))))))))................-........... ( -16.70) >consensus AGAGCAAACCCAAGGUUUUAAUAUCCUAGUGCCUGAAGAUAAC_AAAGCCUCUUCUUGUUCUCCUGGAACUUAAAACCACACUACAAAACCAUU_AUAAAGCAUAU .............((((((((..(((.((.((..(((((...........)))))..)).))...)))..))))))))............................ (-15.94 = -15.30 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:54 2006