| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,978,219 – 16,978,329 |
| Length | 110 |
| Max. P | 0.847431 |
| Location | 16,978,219 – 16,978,329 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.30 |
| Mean single sequence MFE | -24.36 |
| Consensus MFE | -18.12 |
| Energy contribution | -17.57 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16978219 110 - 22224390 UAUUUAUGUAGUCUCGCUUUUGGACCAGAUCAAACUCCAAAUCUCUUAUUAUCCUUGUGCUAGUGACCACUU-AACUGUCCUAUGCACACGAGAAACGUAAAAGAACACU--U ..(((((((..(((((..((((((...........))))))..............((((((((.(((.....-....)))))).)))))))))).)))))))........--. ( -24.90) >DroVir_CAF1 5450 106 - 1 UAUUGUUGCAGACUCGCUUUUGGACAAGAGCAAUGU--AUGUCUUUUAUUAUCCUUGUGCUUGUGGCAACAC--UCAGCUCAAUGCACACGAGAAACGUAGAAGAACAA---U .(((((((((.((..((((((....))))))...))--.)))(((((((....((((((...(((....)))--...((.....)).))))))....))))))))))))---) ( -27.80) >DroPse_CAF1 5073 111 - 1 UAUUUAUGUAGUCUCGCUUUUGGACAAAACUAAUCCACAAAUCUUUUAUUAUCCUUGUGCUUGUGGCAUUUUCCCCUGUCCAAUGCACACGAGAAACGUAGAAGAACAGA--U ..(((((((..(((((...(((((((.....(((((((((....................)))))).)))......)))))))......))))).)))))))........--. ( -24.75) >DroGri_CAF1 4700 105 - 1 UAUUGAUGCAGACUCGCUUUUGGACAAUAACAAAG------UCUUUUAUUAUCCUUGUGCUUGUGGCAACAUUAUCAGCUCAAUGCACACGAGAAACGUAGAAGAACAAC--U (((((.(.((((......)))).))))))......------((((((((....((((((...(((....))).....((.....)).))))))....)))))))).....--. ( -21.10) >DroEre_CAF1 6438 112 - 1 UAUUUAUGUAGUCUCGCUUUUGGACCAGAGCAAACACCCAAUCUUCUAUUAUCCUUGUGCUAGUGACCACUU-AACUGUCCUAUGCACACGAGAAACGUAAAAGAACACUUAC ..(((((((..(((((((((......)))))........................((((((((.(((.....-....)))))).))))).)))).)))))))........... ( -24.20) >DroPer_CAF1 5092 111 - 1 UAUUUAUGUAGUCUCGCUUUUGGACAAAACUAACCCACAGAUCUUUUAUUAUCCUUGUGCUUGUGGCAUUAUCCCCUGUCCAAUGCACACGAGAAACGUAGAAGAACAGA--U ..(((((((..(((((....(((...........)))..................((((((((.((((........))))))).)))))))))).)))))))........--. ( -23.40) >consensus UAUUUAUGUAGUCUCGCUUUUGGACAAGACCAAACC_CAAAUCUUUUAUUAUCCUUGUGCUUGUGGCAACAU_AACUGUCCAAUGCACACGAGAAACGUAGAAGAACAAA__U ..........((((.......))))................((((((((..(((.((((((((.(((..........)))))).))))).).))...))))))))........ (-18.12 = -17.57 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:45 2006