Locus 6822

Sequence ID X_DroMel_CAF1
Location 16,978,044 – 16,978,134
Length 90
Max. P 0.665221
window11168

overview

Window 8

Location 16,978,044 – 16,978,134
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 74.11
Mean single sequence MFE -18.44
Consensus MFE -12.28
Energy contribution -12.00
Covariance contribution -0.28
Combinations/Pair 1.26
Mean z-score -1.13
Structure conservation index 0.67
SVM decision value 0.28
SVM RNA-class probability 0.665221
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16978044 90 - 22224390
GCUUUUGGACCAGAACAAUCA--CCAUCCUUUAUUAUCCUUGUGCUU-GUGACAAUA---UC---AGUCUAAUGCACACGAGAAACGUAAAAGAACAU-----U
.((((((((...((....)).--...))).......(((.(((((..-..(((....---..---.)))....))))).).)).....))))).....-----. ( -13.00)
>DroVir_CAF1 5272 95 - 1
GCUUUUGGACAAGAGCAAUGU--UUGUCUUUUAUUAUCCUUGUGCUU-GUGGCAACAC--UC---AGCUCAAUGCACACGAGAAACGUAGAAGAACAAUCAAU-
((((((....))))))..((.--(((((((((((....((((((...-(((....)))--..---.((.....)).))))))....))))))).)))).))..- ( -27.60)
>DroGri_CAF1 4524 93 - 1
GCUUUUGGACAAUAACAAA------GUCUUUUAUUAUCCUUGUGCUU-GUGGCAGCACUCUC---AGCUCAAUGCACACGAGAAACGUAGAAGAACAAAUCUU-
..(((((........))))------)((((((((..(((.(((((((-(.(((.........---.)))))).))))).).))...)))))))).........- ( -18.40)
>DroEre_CAF1 6259 94 - 1
GCUUUUGGACCAGAGCAAACUCCCAAUCUUCUAUUAUCCUUGUGCUA-GUGACCACU---UAAC-UGUCCUAUGCACACGAGAAACGUAAAAGAACAC-----U
(((((......)))))..........((((.(((..(((.(((((((-(.(((....---....-.)))))).))))).).))...))).))))....-----. ( -17.90)
>DroWil_CAF1 84375 92 - 1
GCUUUUGGACCAUACGAAUUU---CUUCUUUUAUUAUCCUUGUGCUUUGUGUCC-UU---UCAUCUGA-CAUGGCACACGAGAAACGUAAAUGAACAAAU----
.................((((---.(((.(((((....((((((..(..((((.-..---......))-))..)..))))))....))))).))).))))---- ( -15.80)
>DroYak_CAF1 6664 92 - 1
GCUUUUGGACCAGAUUAAAUC--CCAUCCUUUAUUAUCCUUGUGCUU-GUGAUAAUA---UCAA-AUUUCAAUGCACACGAGAAACGUAAAGGAACAU-----U
.....(((.............--)))((((((((..(((.(((((..-.(((.....---....-...)))..))))).).))...))))))))....-----. ( -17.92)
>consensus
GCUUUUGGACCAGAACAAACU__CCAUCUUUUAUUAUCCUUGUGCUU_GUGACAACA___UC___AGUUCAAUGCACACGAGAAACGUAAAAGAACAA______
..........................((((((((..(((.(((((.....(((.............)))....))))).).))...)))))))).......... (-12.28 = -12.00 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:45 2006