Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,973,882 – 16,973,989 |
Length | 107 |
Max. P | 0.931540 |
Location | 16,973,882 – 16,973,989 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.14 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -20.40 |
Energy contribution | -20.63 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.21 |
Mean z-score | -1.82 |
Structure conservation index | 0.62 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16973882 107 + 22224390 -----------UUGUUGUUUCCAAGAGUGCUGAAUGCCAGGAGACUUCUGAUUGUUUUGGCUCCUUUCAUUAUUGGCAGGACUCUUCUGUUGCUGCUGUUGGAAUUUGCUGGGAGAAU-- -----------..((...((((((.(((((.....))(((((((.(((((...((..(((......)))..))...))))).))))))).....))).))))))...)).........-- ( -28.50) >DroSec_CAF1 1956 108 + 1 -----------UUGUUGUUUCCAAGAGUGUUGCAUGCCAGGAGAUUUCUGAUUCUUUUGGCUCCUUUCAUUUUUUUCAGGACUCUUCUUUUGCUGCUGUCGGAAUUUGCUAUGAGAAU-U -----------..((...((((.(.(((...(((.(((((((((........)))))))))((((............)))).........))).))).).))))...)).........-. ( -24.40) >DroEre_CAF1 2177 120 + 1 GCUGGACCCAUUUGGUUUUGCCAGGACUGUUGAAUGCUAGGAGACUUCCGCUUCUUCUGGCUCCUCCCAGUAUUGGCAGAGCCCUUCUGUUGCUGCUGUUGCUGUUUGCCAGGAGAUCCU ...(((.......(((((((((((.((((......(((((((((........)))))))))......)))).)))))))))))((((((..((.((....)).))....)))))).))). ( -45.80) >consensus ___________UUGUUGUUUCCAAGAGUGUUGAAUGCCAGGAGACUUCUGAUUCUUUUGGCUCCUUUCAUUAUUGGCAGGACUCUUCUGUUGCUGCUGUUGGAAUUUGCUAGGAGAAU_U .................(((((.((((((......(((((((((........)))))))))......))))...((((((((......))).)))))...........)).))))).... (-20.40 = -20.63 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:40 2006