Locus 6818

Sequence ID X_DroMel_CAF1
Location 16,972,109 – 16,972,226
Length 117
Max. P 0.532599
window11162

overview

Window 2

Location 16,972,109 – 16,972,226
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.58
Mean single sequence MFE -44.90
Consensus MFE -26.98
Energy contribution -26.48
Covariance contribution -0.50
Combinations/Pair 1.40
Mean z-score -1.46
Structure conservation index 0.60
SVM decision value -0.00
SVM RNA-class probability 0.532599
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16972109 117 - 22224390
AGUGGGCCAACUGGCACCACGUUUCCUGGGACCCCACGAAUACGGACUGCAGCCCACUUUCAAUGCCCUGCCCACGCGCUUUAAUUGGAUAGUGGCCAGUCCUUUACUAUUGGCACA
.(((((((....))).))))(((((.(((....))).))).))((((((..(((.(((((((((.....((......))....)))))).))))))))))))............... ( -39.30)
>DroPse_CAF1 201 117 - 1
UGUGGGUCAGUUGGCGCCACGUUUCCUGGGCCCUCACGAGGGCGGUCUGCAGGCCACGCACUCGGCACUGCCCGUGCGCUACAAUUGGGUGGUGGCCAGUCCCCUGCUGAUGGCCCA
.(((((((....))).)))).......(((((.(((...(((.((.((...((((((.((((((((((.....))))........)))))))))))))).)))))..))).))))). ( -53.50)
>DroGri_CAF1 201 117 - 1
CGUUGGUCAGCUGGCUCCACGUUUCAUUGGCCCCCAUGAGGGUGGACAGCAAUCGGCAUUUACGGCACUGCCCACACGUAACAAUUGGGUGGUGGCCAGCCCCAUACUGCUGGCACA
.((((((..((((..(((((.((((((.(....).))))))))))))))).))))))........(((..((((...........))))..)))((((((........))))))... ( -45.60)
>DroSec_CAF1 201 117 - 1
AGUGGGUCAACUGGCUCCACGUUUCCUGGGACCCCACGAAUACGGACUGCAGCCCACUUUCAAUGCCCUGCCCUCGCGCUUUAAUUGGGUAGUGGCCAGUCCUUUACUAUUGGCCCA
..((((((((.(((......(((((.(((....))).))).))((((((...............(((((((((.............)))))).)))))))))....))))))))))) ( -40.18)
>DroEre_CAF1 201 117 - 1
AGUUGGCCAACUGGCUCCACGUUUCCUGGGACCCCACGACUACGGAUUGCAACCCACUUUCAGUGCUCUGCCCACCCGCUUCAGUUGGGUCGUGGCCAGUCCUUUACUAUUGGCCCA
....(((((((((((((((.......)))(((((.((.....(((...(((...(((.....)))...)))....))).....)).)))))..)))))))..........))))).. ( -37.30)
>DroPer_CAF1 201 117 - 1
UGUGGGUCAGUUGGCGCCACGUUUCCUGGGCCCUCACGAGGGCGGUCUGCAGGCCACGCACUCGGCACUGCCCGUGCGCUACAAUUGGGUGGUGGCCAGUCCCCUGCUGAUGGCCCA
.(((((((....))).)))).......(((((.(((...(((.((.((...((((((.((((((((((.....))))........)))))))))))))).)))))..))).))))). ( -53.50)
>consensus
AGUGGGUCAACUGGCUCCACGUUUCCUGGGACCCCACGAGGACGGACUGCAGCCCACUUUCACGGCACUGCCCACGCGCUACAAUUGGGUGGUGGCCAGUCCCUUACUAUUGGCCCA
.(((((((....)))....((((((.(((....))).))).))).........))))..........(((((((...........))))))).(((((((........))))))).. (-26.98 = -26.48 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:39 2006