Locus 6817

Sequence ID X_DroMel_CAF1
Location 16,970,641 – 16,970,750
Length 109
Max. P 0.682632
window11161

overview

Window 1

Location 16,970,641 – 16,970,750
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 69.46
Mean single sequence MFE -20.10
Consensus MFE -8.36
Energy contribution -9.28
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -1.77
Structure conservation index 0.42
SVM decision value 0.31
SVM RNA-class probability 0.682632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16970641 109 - 22224390
UACAUCCCCCAUCUCCUCCACAUUCAGUAUCUUUUGAUUCAUUCGAUAUAUGUUUUGUGUAUAUCGCAAGCUAAUCGCGGAUAGUUUUAAAAAUUUAAUUCGCGAAAAU
.......................((((......))))......((((((((.......))))))))........((((((((((((.....))))..)))))))).... ( -16.30)
>DroSec_CAF1 1843 95 - 1
GACAUUCCCCAUCUCCUUCACAUUCCGU-------GAU-------AUAUAUGUUUUGUGUAUAUCGCAAGCUGAUAGCGGAUAGUUUUCAAAAUUUAGUUCCCGAAAAU
.......................(((((-------(((-------((((((.....)))))))))))..((.....)))))..((((((..............)))))) ( -17.74)
>DroSim_CAF1 1561 95 - 1
GAUAUUCCCCAUCUCCUUCACAUUCCGU-------GAU-------AUAUAUGUUUUGUGUAUAUCGCAAGCUGAUCGCGGAUAGUUUUCAAAAUUUAGUUCCCGAAAAU
.......................(((((-------(((-------((((((.....)))))))))))..((.....)))))..((((((..............)))))) ( -17.44)
>DroEre_CAF1 1999 94 - 1
CACA---------------CGUUACCAUAUAACUUGAUUCAUUCGGUAUAUGUUUUGUGUAUAUCGUAUGCUGAUCGCGGAUAGUUCCAAAAGUUCUAUUCGCGAAAAU
..((---------------.((((.....)))).))......((((((((((............))))))))))((((((((((..(.....)..)))))))))).... ( -25.60)
>DroYak_CAF1 1912 91 - 1
---C---------------CUAUACCAUAUCACUUGAUUCAUUCGGUAUAUGUUUUGUGUAUAUCGCAUGAUGAUCGCGGAUAGUUCCUACACUUCUAUUCGCGAAAAU
---.---------------...................((((.((((((((.......)))))))).))))...((((((((((...........)))))))))).... ( -23.40)
>consensus
GACAU_CCCCAUCUCCU_CACAUUCCGUAU___UUGAUUCAUUCGAUAUAUGUUUUGUGUAUAUCGCAAGCUGAUCGCGGAUAGUUUUAAAAAUUUAAUUCGCGAAAAU
...........................................((((((((.......))))))))........((((((((...............)))))))).... ( -8.36 =  -9.28 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:38 2006