Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,970,530 – 16,970,633 |
Length | 103 |
Max. P | 0.996972 |
Location | 16,970,530 – 16,970,633 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.37 |
Mean single sequence MFE | -18.72 |
Consensus MFE | -13.50 |
Energy contribution | -13.14 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.22 |
Mean z-score | -2.88 |
Structure conservation index | 0.72 |
SVM decision value | 2.78 |
SVM RNA-class probability | 0.996972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16970530 103 + 22224390 UUAAUACUUGUCCCAAAAACAAUUUUACAAGUACAUAGCUUCCAAAAAAUUAGCAAAAACAUCGUUGAUUAGCGAUUAACAAC-----GGUACAAGAUUAUUCCAAAA-- .((((.(((((.((.......................(((...........))).........(((((((...)))))))...-----)).)))))))))........-- ( -14.30) >DroSec_CAF1 1735 100 + 1 UAAGUACUUGUACCAAAAACAAUUUUACAAAU---UAGUUUCCAAAAAAUUAGCAAAAACAUCGUUGAUAAGCGAUUAACAAC-----GGUGCAAGAAUAUUCCAACA-- ......((((((((.................(---((((((.....))))))).......((((((....)))))).......-----))))))))............-- ( -18.40) >DroSim_CAF1 1453 100 + 1 UUAUUACUUGUACCAAAAACAAUUUUACAAAU---UAGUUUCCAAAAAAUUUGCAAAAACAUCGUUGAUAAGCGAUUAGCAAC-----GGUGCAAGACUAUUCCAACA-- ......((((((((........((((.(((((---(...........)))))).))))..((((((....)))))).......-----))))))))............-- ( -19.80) >DroEre_CAF1 1881 110 + 1 UGAAUACUUGUACCAAAAACAAUUUUGAAUAUAUUUAGUUUCCCGAAAAAUACCAUAAAGAACGUUGAUUAACGAUUACCAACGAUCCGGUACAAGAUUAUUGAAACAAU ......((((((((........(((((................)))))...........((.(((((............))))).)).)))))))).............. ( -17.39) >DroYak_CAF1 1795 109 + 1 UUAAUACUUGUAUCAAAAACAAUUUUGAAAAUAUUUGGUUUCCC-AAACAUACCAAAAAGAUCGUUGUUCAACGAUUACCAACGAUCCGGUACAAGAUUUUACAAACAAU ......((((((((........(((((...((.(((((....))-))).))..))))).((((((((............)))))))).)))))))).............. ( -23.70) >consensus UUAAUACUUGUACCAAAAACAAUUUUACAAAUA__UAGUUUCCAAAAAAUUAGCAAAAACAUCGUUGAUAAGCGAUUAACAAC_____GGUACAAGAUUAUUCCAACA__ ......((((((((..............((((.....))))...................((((((....))))))............)))))))).............. (-13.50 = -13.14 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:37 2006