Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,958,894 – 16,959,014 |
Length | 120 |
Max. P | 0.974042 |
Location | 16,958,894 – 16,959,014 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -43.46 |
Consensus MFE | -36.40 |
Energy contribution | -36.80 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.97 |
Structure conservation index | 0.84 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16958894 120 + 22224390 UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUACACUACAUACACAUAGGUGAGUUCGAAAGCAGCAAGUCUUGAGGAUGGACGAGACACGAACGAGUUGGAAACUCUA ((((.((((..((((((((.(......)..)))))))).((((...((.((..(((....))).((((....).)))......)))).))))..)))).))))..((((.....)))).. ( -37.80) >DroSec_CAF1 2299 120 + 1 UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGCGAAAGCAGCAAGUUUUGGGGAUGGACGAGACACGAACGAGUAGGAAACACUA ((((.((((..((((((((.(......)..)))))))).((((((.(((....(((....)))..(((....)))........)))))))))..)))).))))...(((.(....)))). ( -46.90) >DroSim_CAF1 6903 120 + 1 UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGCGAAAGCGGGAAGUUUUGGGGAUGGACGAGACACGAACGAGUUGGAAACUCUA ((((.((((..((((((((.(......)..)))))))).((((((.(((....(((....)))..(((....)))........)))))))))..)))).))))..((((.....)))).. ( -46.10) >DroEre_CAF1 56 120 + 1 UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUACGAUUGCGGCAAGCCUUGGGGAUGGACGAGACACGAAGGAGUUGAAAACUCUA ((((.((((..((((((((.(......)..)))))))).((((((.(((.........((((..((.((....))))..)))))))))))))..)))).)))).(((((.....))))). ( -44.40) >DroYak_CAF1 56 115 + 1 UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGUGAGUGCGGCACGCCUUGGGGAUGGACGAAACACGAAC-----GGAAACACUA ..(((((....((((((((.(......)..)))))))).((((((.((((((.(((((......))))).))).((....)).)))))))))..)))))......-----(....).... ( -42.10) >consensus UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGCGAAAGCGGCAAGUCUUGGGGAUGGACGAGACACGAACGAGUUGGAAACUCUA ((((.((((..((((((((.(......)..)))))))).((((((........(((....)))..(((....)))...........))))))..)))).)))).......(....).... (-36.40 = -36.80 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:36 2006