Locus 6814

Sequence ID X_DroMel_CAF1
Location 16,957,518 – 16,957,637
Length 119
Max. P 0.567237
window11158

overview

Window 8

Location 16,957,518 – 16,957,637
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.86
Mean single sequence MFE -33.70
Consensus MFE -24.21
Energy contribution -24.77
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.30
Structure conservation index 0.72
SVM decision value 0.07
SVM RNA-class probability 0.567237
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16957518 119 - 22224390
-GAAAAACAACUUUGGAGGUGGAUCGCCAGGCGGAAAAUGAGGAGGGGGAAUGCCCUCCAACGCAAUCAUUUCCGCGCCCCAAAAAUAAAAGUGAAAACUUUUACGACGACUCCUCUUUU
-.............(((((.((.(((.(..(((((((.(((((((((......)))))).......))))))))))..........(((((((....))))))).).))))))))))... ( -37.71)
>DroEre_CAF1 21839 116 - 1
-AAAAAACAACUUUGGAGGUGGAUCGGCAGCCGGAAAAUGGGGAGGGGGAAUGCCCUCAAACGCAAUCAUUUCCGCGCCCCAAAAAUAAAAGUGAAAACUUUUACG---ACUCCUCUUUU
-.............(((((.((.(((............(((((.(((((....)))))...(((..........))))))))....(((((((....)))))))))---))))))))... ( -34.60)
>DroYak_CAF1 21456 120 - 1
AAAAAAACAAUUUUCGAUGUGGAUCGGCAGCCGGAAAACGAGAAGCGGGCAUGCCCUCAAGCGCAAUCAUUUCCGCGCCCCAAAAAUAAAAGUGAAAACUUUUACGACGACUCCCACUUU
..................((((...(((.((.(((((..((...(((((....)))....))....)).)))))))))).......(((((((....))))))).........))))... ( -28.80)
>consensus
_AAAAAACAACUUUGGAGGUGGAUCGGCAGCCGGAAAAUGAGGAGGGGGAAUGCCCUCAAACGCAAUCAUUUCCGCGCCCCAAAAAUAAAAGUGAAAACUUUUACGACGACUCCUCUUUU
..............(((((((((((((...))))..........(((((....))))).............)))))..........(((((((....)))))))......))))...... (-24.21 = -24.77 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:35 2006