| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,956,001 – 16,956,119 |
| Length | 118 |
| Max. P | 0.542871 |
| Location | 16,956,001 – 16,956,119 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.53 |
| Mean single sequence MFE | -27.89 |
| Consensus MFE | -19.32 |
| Energy contribution | -19.63 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16956001 118 - 22224390 GUGUGUGGAGGGCAGGGAACCCCAUAAUGUGGCACGG-GCCUUUGAAGCUGCGGCAUCUUUGCU-CACAAGACAAAUAAUCAAAAAAAAAAAAAAAAAAAGAGUGUCAACGCAAUUAACA ((((((((.((........))))))....((((((((-((....((.((....)).))...)))-)....((.......)).....................))))))))))........ ( -25.10) >DroSec_CAF1 33210 108 - 1 GUGUGUGGAGGGCAGGGAACCCAAAAUUGUGGCAUGG-GUCUUUGAAGCUGGGGCAUCUUUGCU-CACAAGACAAAUAAUCAAACA----------AAAAGAGUGUCAACGCAAUUAACA .(((((...(((((((((.((((.......(((....-)))........))))...))))))))-)....((((.....((.....----------....)).)))).)))))....... ( -26.86) >DroEre_CAF1 20476 108 - 1 GUGAGUGGAGGGUAGGGAACCCAAUCAUGUGGCAUGG-GCCUUUGAAGAUGAGACAUCUUUGCUCCACAAGACAAGUAAUCAAACA-----------AAAGAGUGUCAACGCAAUUAACA (((.(((((((((.((....)).)))....(((....-)))...(((((((...))))))).))))))..((((.....((.....-----------...)).))))..)))........ ( -29.20) >DroYak_CAF1 19956 108 - 1 GUGUGUGGAGGGUGGGGAUCCCAAUAAUGUGGCAUGGGGCCUUUGAAGAGGAGGCAUCUUUGCU-CACAAGACAAAUAAUCAAACA-----------AAAGAGUGUCAACGCAAUUAACA .(((((...(((..(((((((((...........))))((((((.....)))))))))))..))-)....((((.....((.....-----------...)).)))).)))))....... ( -30.40) >consensus GUGUGUGGAGGGCAGGGAACCCAAUAAUGUGGCAUGG_GCCUUUGAAGAUGAGGCAUCUUUGCU_CACAAGACAAAUAAUCAAACA___________AAAGAGUGUCAACGCAAUUAACA (((((((...((((((((..(((......)))......(((((.......))))).)))))))).)))..((((.....((...................)).)))).))))........ (-19.32 = -19.63 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:34 2006