| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,955,682 – 16,955,791 |
| Length | 109 |
| Max. P | 0.927643 |
| Location | 16,955,682 – 16,955,791 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.67 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -13.11 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.927643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16955682 109 + 22224390 GA----UAUUAGGCCUUUUUUUAUUUUGGAGUAAAAAUCUGCCUUU-----AGGAU-CCCAGUUAUAUGCUCUUGUUUUUCGCUGUGUAAGCAACA-UGGAGAAAGGAGGGAGGCAUAUU ((----(...((((...((((((((....))))))))...))))..-----...))-)......(((((((((..((((((.((((((.....)))-))).))))))..))).)))))). ( -28.90) >DroSec_CAF1 32896 93 + 1 GA----UAUUAGGGCUUU-UGUAUUUGAAAGUAAAAAUCUCCCG----------------A---GUAUGCUCUUGUUUUUUGCUGUGUAAGCAACAACAGAGAAA---GGGAGGCAUAUU ..----.......(((((-(......)))))).....(((((((----------------(---(....)))(((((..(((((.....))))).))))).....---))))))...... ( -23.20) >DroEre_CAF1 20150 112 + 1 UAUGCUUGUUAUGCUUUU-UGGAUUUUGAAGUUUAAAAGUGCCUUAGUACAAGGAUGCCCA---GUAUGUACUUGUUUUUCUCUGUGUAAGCAACA-GGGAGAAA---GGGAGGCAUAUU ...((.......)).(((-((((((....)))))))))(((((((((((((.((....)).---...))))))(.(((((((((((.......)))-))))))))---.))))))))... ( -30.90) >DroYak_CAF1 19632 101 + 1 -----------UGCUUUG-UGUAUUUCGAAGUACAAAUCAUGUUUAGUACAAGGCUAGCCA---AUAAGCGCUGUUUUUUCUCUGUGUAAUCAACA-GGGAGAAA---GGAAGGCAUAUU -----------.((((..-((((((....)))))).....((.(((((.....))))).))---..))))(((.((((((((((.(((.....)))-.)))))))---))).)))..... ( -27.80) >consensus GA____UAUUAGGCCUUU_UGUAUUUUGAAGUAAAAAUCUGCCUUA_____AGGAU_CCCA___AUAUGCUCUUGUUUUUCGCUGUGUAAGCAACA_GGGAGAAA___GGGAGGCAUAUU ...........(((.....((((((....)))))).....))).....................((((((.((..(((((((.(((.......))).)))))))....))...)))))). (-13.11 = -12.30 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:33 2006