Locus 6810

Sequence ID X_DroMel_CAF1
Location 16,953,315 – 16,953,434
Length 119
Max. P 0.664885
window11153

overview

Window 3

Location 16,953,315 – 16,953,434
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.48
Mean single sequence MFE -23.12
Consensus MFE -19.85
Energy contribution -19.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.86
SVM decision value 0.28
SVM RNA-class probability 0.664885
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16953315 119 - 22224390
AUGCGAUGCUCAUCUCCAACCAAUUGAGUUCAAUUGAAGUAGCGACCA-ACAACAAUGGCACACCAUUUAUGAAUCAUUUGUGUAAAAUAUAACAAAAUCAGGAGGGGAAAUUGCAGAAA
.((((((..((..((((...((((((....)))))).......((...-.((..(((((....)))))..)).....(((((..........))))).)).))))..)).)))))).... ( -25.80)
>DroSec_CAF1 30541 116 - 1
----UAUGCUCAUCUCCAACCAAUUGAGUUCAAUUGAAGUAGCGACCAAACAACAAUGGCACACCAUUUAUGAAUCAUUUGUGGCAAAUAUAACAAAAUCACUAGGGGAAAUUGCAGAAA
----..(((...(((((...((((((....))))))...(((.(((((........)))....((((..(((...)))..))))..............)).))))))))....))).... ( -22.50)
>DroEre_CAF1 17770 114 - 1
----GAUGCUCAUCUCCAACCAAUUGAGUUCAAUUGAAGUAGUAACCA-ACAACAAUGGGACACCAUUUAUGAAUCAUUUGUGGAAAAUAUAACAAAAUCAAG-GGGGAAAUUGCAGACA
----..(((...(((((...((((((....))))))..((.(((.(((-.......)))....((((..(((...)))..))))....))).)).........-)))))....))).... ( -22.30)
>DroYak_CAF1 17248 114 - 1
----GAUGCUCAUCUCCAACCAAUUGAGUUCAAUUGAAGUAGUAGGCA-UCAACAAUGGGACACCAUUUAUGAAUCAUUUGUGGAAAAUAUAACAAAAUCAAG-GGGGAAAUUGCAGAAA
----..(((...(((((...((((((....))))))............-(((..(((((....)))))..)))....(((((..........)))))......-)))))....))).... ( -21.90)
>consensus
____GAUGCUCAUCUCCAACCAAUUGAGUUCAAUUGAAGUAGCAACCA_ACAACAAUGGCACACCAUUUAUGAAUCAUUUGUGGAAAAUAUAACAAAAUCAAG_GGGGAAAUUGCAGAAA
......(((...(((((...((((((....))))))..............((..(((((....)))))..)).....(((((..........))))).......)))))....))).... (-19.85 = -19.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:30 2006