Locus 6809

Sequence ID X_DroMel_CAF1
Location 16,946,715 – 16,946,831
Length 116
Max. P 0.747614
window11152

overview

Window 2

Location 16,946,715 – 16,946,831
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -32.12
Consensus MFE -26.11
Energy contribution -26.42
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.96
Structure conservation index 0.81
SVM decision value 0.47
SVM RNA-class probability 0.747614
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16946715 116 + 22224390
AACAAACCGCCAGCAUUAACCCUUGUUCGCCCCUGGGAUACACGCACUUUGCGUGGGACAAAGAUGGCCUUCAUUUUCAA--CUUGGGGCUUG-AGUUUAAUUAAACGCAAUGCG-CAAA
........((..(((((...........(((((.((....(((((.....))))).....((((((.....))))))...--)).)))))...-.((((....))))..))))))-)... ( -29.40)
>DroSec_CAF1 29534 118 + 1
AACAAACCGCCAGCAUUAACCCUUGUUCGCCCCUGGAAUCCACGCACUUUGCGUGGGACAAAGAUGGCCUUCAUUUUCAU--CUUGGGGCUUGGACUUUAAUUAAACGCAAUGCGGCAAA
......((((..((.((((.....(((((((((.....(((((((.....)))))))...(((((((.........))))--))))))))..)))).....))))..))...)))).... ( -36.90)
>DroEre_CAF1 16879 116 + 1
AACAAACUGCCAACAUUAACCCUUGUUCGCCCCUGGAAUCCACGCACUUUGCGUGGGACAAAGAUGGCCUUCAUUAUCAU--CUUGGGGCUUG-ACUUUAAUUAAACGCAAUGCU-CACA
.......(((.((((........)))).(((((.(((.(((((((.....))))))).....(((((......))))).)--)).)))))...-.............))).....-.... ( -30.50)
>DroYak_CAF1 16136 117 + 1
AAUAAACCGCCAGCAUUAACCCUUGUUCGCCCCUGGAAUCCACGCACU-UGCGUGGGACAAAGAUGGCCUUCAUUUUCAUUUCUUGGGGCUUG-ACUUUAAUUAAACGCAAUGCU-CAAA
...........((((((...........(((((.(((((((((((...-.)))))))...((((((.....))))))...)))).)))))(((-(......))))....))))))-.... ( -31.70)
>consensus
AACAAACCGCCAGCAUUAACCCUUGUUCGCCCCUGGAAUCCACGCACUUUGCGUGGGACAAAGAUGGCCUUCAUUUUCAU__CUUGGGGCUUG_ACUUUAAUUAAACGCAAUGCG_CAAA
........((.((((........)))).(((((.((..(((((((.....)))))))...((((((.....)))))).....)).))))).................))........... (-26.11 = -26.42 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:29 2006