| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,945,551 – 16,945,656 |
| Length | 105 |
| Max. P | 0.684826 |
| Location | 16,945,551 – 16,945,656 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.72 |
| Mean single sequence MFE | -25.93 |
| Consensus MFE | -18.65 |
| Energy contribution | -19.15 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16945551 105 - 22224390 AUGCGUCU------GCUUCCCAU---------UUCCACUCUUUUCCCAACCAGCUGCAACACCAUAAAGUGUGAAAUGGAAAAACACAUUAAAAAAGCAGGGAAAAAGUCGGGGGAAAAG ..((....------))(((((..---------..(((((.(((((((.......(((.((((......))))..((((........))))......))))))))))))).)))))))... ( -23.21) >DroSec_CAF1 28363 105 - 1 AUGCUUCU------GCUUCCCAU---------UUCCACUCUUUUCCCAACCAGCUGCAACACCAUAAAGUGUGAAAUGGAAAAACACAUUAAAAAAGCAGGGGAAAAGUCGGGGGAAAAG ..((....------))(((((..---------..((...((((((((......((((.((((......))))..((((........))))......))))))))))))..)))))))... ( -27.70) >DroEre_CAF1 15741 113 - 1 AUGGUUCU------GCUUC-CAUUUCCACUUUUUCCACUCCUUUACCAACCAGCUGCAACACCAUAAAGUGUGAAAUGGAAAAACACAUUAAAAAAGCAGGGAAAAAGUCGGGGGAAAAG .(((....------....)-))(..(((((((((((.((.((((..............((((......))))..((((........))))...)))).))))))))))).))..)..... ( -25.30) >DroYak_CAF1 15072 119 - 1 AUGCUUCUGCUGCUGCUUC-CAUUUCCACUUUUUCCACUCCUUUUCCAAGCAGCUGCAGCACCAUAAAGUGUGAAAUGGAAAAACACAUUAAAAAAGCAGGGAAAAAGUCGGGGAAAAAG ..((....)).........-..(..(((((((((((.((.(((....))).))((((.((((......))))..((((........))))......))))))))))))).))..)..... ( -27.50) >consensus AUGCUUCU______GCUUC_CAU_________UUCCACUCCUUUCCCAACCAGCUGCAACACCAUAAAGUGUGAAAUGGAAAAACACAUUAAAAAAGCAGGGAAAAAGUCGGGGGAAAAG ................................((((...((((((((......((((.((((......))))..((((........))))......))))))))))))....)))).... (-18.65 = -19.15 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:28 2006