| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,943,382 – 16,943,475 |
| Length | 93 |
| Max. P | 0.829528 |
| Location | 16,943,382 – 16,943,475 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.25 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -18.39 |
| Energy contribution | -17.07 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16943382 93 - 22224390 ACUCGUAGGCAUUACAAUACUGUAAUUACAGUCUACUUUCCACUGCUGAGCCGCGGAUUUUCUUUUUA---AUCUCUAGCUUAACUCGGUUGGC---AA----------- ....((((((((((((....))))))....))))))...((((((.(((((...(((((........)---))))...)))))...))).))).---..----------- ( -20.70) >DroSec_CAF1 26307 104 - 1 ACUCGUAGGCAUUACAAUACUGUAAUUACAGUCUACUUUCCACUGCUGAGCCGCGGAUUUUCUUUUUA---AUUUCUAGCUUAACUCGGCUGGC---UAGUUUAAACGGG ....((((((((((((....))))))....))))))...((.((((......))))........((((---(...((((((..........)))---))).))))).)). ( -23.60) >DroEre_CAF1 13028 110 - 1 ACUCGCAGGCAUUAUAAUACUGUAAUUACAGUCCACUUUCCACUGUUGAGCCGCGGAUUUUCUUUUUCACUAUUUUCAGCUUUACUCAGCUGGUCUUUAGCUGAAAUGGA ..((((.(((.........((((....))))((.((........)).)))))))))....(((.((((((((...((((((......))))))....))).))))).))) ( -26.90) >consensus ACUCGUAGGCAUUACAAUACUGUAAUUACAGUCUACUUUCCACUGCUGAGCCGCGGAUUUUCUUUUUA___AUUUCUAGCUUAACUCGGCUGGC___UAG_U_AAA_GG_ ..((((.(((((((((....))))))..((((.........))))....)))))))...................((((((......))))))................. (-18.39 = -17.07 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:26 2006