Locus 6803

Sequence ID X_DroMel_CAF1
Location 16,934,003 – 16,934,113
Length 110
Max. P 0.574816
window11144

overview

Window 4

Location 16,934,003 – 16,934,113
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 81.23
Mean single sequence MFE -21.28
Consensus MFE -11.10
Energy contribution -12.58
Covariance contribution 1.48
Combinations/Pair 1.09
Mean z-score -2.02
Structure conservation index 0.52
SVM decision value 0.08
SVM RNA-class probability 0.574816
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16934003 110 + 22224390
AGUACUUAAACUACGUUGCUCACUUAUUGUAGUUUAAGUACAAUUAGUUGCAAAUAAUUACUUAGCUGCAAUCAGGUGCGGUAAAACAAUAUGGAUUUAAUUUCUAAACA
.((((((((((((((............)))))))))))))).....(((...............((((((......)))))).........((((.......))))))). ( -26.40)
>DroSec_CAF1 3762 100 + 1
AGUACUUAAACUACGUUGCUCAUUUAUUGUAAUUUAAGUACACUUAGUUACAGAUAAUUACUUC----------GGUGCAGGAAAACAAUAUGGAUUUAAUUUCUAAACA
.(((((((((.((((............)))).))))))))).....(((..(((.(((((..((----------.(((..(.....)..))).))..)))))))).))). ( -17.80)
>DroSim_CAF1 3765 100 + 1
CGUACUUAAACUACGUUGCUCAUUUAUUGUAAUUUAAGAACACUUAGUUGCAGAUAAUUACUUC----------GGUGCAGGGAAACAAUAUGGAUUUAAUUUCUAAACA
.((.((((((.((((............)))).)))))).)).....(((..(((.(((((..((----------.(((...(....)..))).))..)))))))).))). ( -17.80)
>DroEre_CAF1 4071 109 + 1
CGUACUUAAACUACGUUGCUCAUUUAUUUUAGUUUAAGUGCACUUAGUUACAACUAAUUACUUCGUUGCAAUCACGUGUUGGA-AACAAUAUGGAUUUAAUUUCUACACA
.((((((((((((................))))))))))))..(((((....))))).......((((.((((.(((((((..-..)))))))))))))))......... ( -26.59)
>DroYak_CAF1 3975 96 + 1
AGUAAUUAAACUGCGUUGCUUAUUUAUUUUUGUUUAAGUACACUUGGUUACAACUAA--------------UCACGUGCUGGAAAACAAUAUGCAUUUAAUUUCUAAACA
((.(((((((.(((((((((((..((....))..))))))(((.((((((....)))--------------))).)))............)))))))))))).))..... ( -17.80)
>consensus
AGUACUUAAACUACGUUGCUCAUUUAUUGUAGUUUAAGUACACUUAGUUACAAAUAAUUACUUC_______UCAGGUGCAGGAAAACAAUAUGGAUUUAAUUUCUAAACA
.((((((((((((((............)))))))))))))).....(((..........................((........))....((((.......))))))). (-11.10 = -12.58 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:22 2006