Locus 6801

Sequence ID X_DroMel_CAF1
Location 16,927,157 – 16,927,253
Length 96
Max. P 0.990488
window11138

overview

Window 8

Location 16,927,157 – 16,927,253
Length 96
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 76.22
Mean single sequence MFE -26.40
Consensus MFE -15.44
Energy contribution -16.88
Covariance contribution 1.44
Combinations/Pair 1.18
Mean z-score -2.53
Structure conservation index 0.58
SVM decision value 2.22
SVM RNA-class probability 0.990488
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16927157 96 - 22224390
AAUGCAUUUGGAAAAAUGAAUUUCACGAUAUGUGAGAUUCACUUUUGGGGCAGCGAAAGUUGUUGCUU----------------ACAUUUU--CAAA--UGCAAAUUAUUCUUUAA---
..((((((((((((..((((((((((.....)))))))))).....(.((((((....)))))).)..----------------...))))--))))--)))).............--- ( -34.70)
>DroSec_CAF1 14002 114 - 1
AAUGCAUUUGGAAAAAUGAAUUUCGAGAUAUGUGAGCUUCACUUUUGGGACAGCGAAAGUUGUAGUUUGU--CUUAGGAGAUUUGCAUUUUUACAAAUUUGCAAAUUAUUCUUUAA---
..((((((((.(((((((.(((((((((((.(((.....))).......(((((....)))))....)))--)))..)))))...))))))).))))..)))).............--- ( -27.30)
>DroSim_CAF1 15329 114 - 1
AAUGCAUUUGGAAAAAUGAAUUUCGAGAUAUGUGAGCUUCACUUUUGGGACAGCGAAAGUUGUAGUUUAU--UUUAGGGGAUUUGCAUUUUUACAAAUUUGCAAAUUAUUCUUUAA---
..((((((((.(((((((.((..(..((...(((((((.((((((((......)))))).)).)))))))--.))..)..))...))))))).))))..)))).............--- ( -24.00)
>DroEre_CAF1 14270 116 - 1
AAUGCAUUUGGAAAAAAA-AUUUCAUUACAUGUGAGAUCUACUUUUAGGACAGCGAAAUUUGUUACUUACAGAUUGAGAGAUAUACAUUUUUGUAAAU--GCUAUCCAAUCUUUAAAAG
...(((((((.(((((..-(((((.(((..((((((..(((....)))(((((......))))).))))))...)))))))).....))))).)))))--))................. ( -19.60)
>consensus
AAUGCAUUUGGAAAAAUGAAUUUCAAGAUAUGUGAGAUUCACUUUUGGGACAGCGAAAGUUGUAGCUUAU___UUAGGAGAUUUACAUUUUUACAAAU_UGCAAAUUAUUCUUUAA___
..((((((((.(((((((((((((((.....))))))))).........(((((....))))).......................)))))).))))..))))................ (-15.44 = -16.88 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:17 2006