Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,888,258 – 1,888,359 |
Length | 101 |
Max. P | 0.742516 |
Location | 1,888,258 – 1,888,359 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -26.74 |
Energy contribution | -27.93 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.14 |
Mean z-score | -1.72 |
Structure conservation index | 0.80 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1888258 101 + 22224390 AGGCUCCAUCAUCCAUCCACUCGAGCCUCUGCCGGCGUCGACGUCGGCGCCAAUCCACUAUGUGGCAUCCAGUGUUGCCAGCACAGCUUGGGUAUUUUCCC ..................((((((((...(((.(((((((....)))))))...........(((((........))))))))..))))))))........ ( -34.30) >DroSec_CAF1 1846 101 + 1 AGGCUCCAUCAUCCAUCCACUCGAGCCUCUGCCGGCGUCGACGUCGGCGCCAAUCCACUAUGCGGCAUCCAGUGUUGCCAGCACAGCUCGGGUAUUUUCCC ..................((((((((...(((.(((((((....)))))))............((((........)))).)))..))))))))........ ( -35.80) >DroEre_CAF1 1886 99 + 1 AGGCUCCAUCAUCCAGCCACUCGAGCCUCUGUCGGCGUUGACGUCGGCGCCGAUCCACUAUGCGGCAUCCAGUGUUGCCAGCACAGCCCGGC--UUUUCCC .((((.........))))....(((((...((((((((((....))))))))))...((.(((((((........)))).))).))...)))--))..... ( -37.00) >DroYak_CAF1 1661 95 + 1 AGGCUCCAUCAUCCAUCCACUCGAGCCUCUGCCG------ACGUCGGCGCCGAUCCACAAUGCGGCAUCCAGUGUUGCCAGCAUCGCUCUGGUUUUUUCCC ((((((................))))))..((((------....))))((((..........))))..((((.((((....))..)).))))......... ( -26.09) >consensus AGGCUCCAUCAUCCAUCCACUCGAGCCUCUGCCGGCGUCGACGUCGGCGCCAAUCCACUAUGCGGCAUCCAGUGUUGCCAGCACAGCUCGGGUAUUUUCCC ..................((((((((....(((((((....)))))))............(((((((........)))).)))..))))))))........ (-26.74 = -27.93 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:58 2006