Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,922,926 – 16,923,020 |
Length | 94 |
Max. P | 0.997610 |
Location | 16,922,926 – 16,923,020 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 80.54 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -19.96 |
Energy contribution | -21.56 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.10 |
Mean z-score | -3.44 |
Structure conservation index | 0.58 |
SVM decision value | 2.89 |
SVM RNA-class probability | 0.997610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16922926 94 + 22224390 CGCUGAAUGAGUUAGGA--------------GAUCGAGAUUCCGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUUCACUUUCUACGCA----------- .((.....((((..(((--------------((((((((...((((((((((..(((......)))...)))).))))))..))))..))))))).)))).....)).----------- ( -28.10) >DroSec_CAF1 9792 105 + 1 CGCAGAAUGAGUUAGGA--------------GAUCGAGAUUCCGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUUCACUUUCUACGCAUUCUGCAAUUA .((((((((.((.((((--------------((((((((...((((((((((..(((......)))...)))).))))))..))))..))))))...))....)).))))))))..... ( -36.60) >DroSim_CAF1 11093 105 + 1 CGCAGAAUGAGUUAGGA--------------GAUCGAGAUUCCGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUUCACUUUCUACGCAUUCUGCAAUUA .((((((((.((.((((--------------((((((((...((((((((((..(((......)))...)))).))))))..))))..))))))...))....)).))))))))..... ( -36.60) >DroEre_CAF1 9733 118 + 1 -GCAGUUUGAGUUAGGAGAUAGGAGAUCGGAGAUCGAGAUUCCGUCUCGGAUAUGGCGACCAUGUCUAAGUCUGGAGACUACUCUUCGUAUCUUUCACUUUCUACGCAUUCUGCAAUUA -((((..((.((.(((((.(..(((((((((((...((.(((((.((..(((((((...)))))))..)).).)))).))..)))))).)))))..).))))))).))..))))..... ( -43.00) >DroYak_CAF1 9685 90 + 1 -GCAGAAUGCUUUAGGA--------------GAUCGAGAUUCCGUCUCGGUUAUGGCGACAAUGUCUAAAAC--------------CAAAUCUUUCACUUUCUACGCAUUCUGCAAUUA -(((((((((..(((((--------------(...(((((...)))))((((..(((......)))...)))--------------)...........)))))).)))))))))..... ( -28.70) >consensus CGCAGAAUGAGUUAGGA______________GAUCGAGAUUCCGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUUCACUUUCUACGCAUUCUGCAAUUA .((((((((...(((((..................(((((...)))))((((..(((......)))...))))(((((....)))))............)))))..))))))))..... (-19.96 = -21.56 + 1.60)
Location | 16,922,926 – 16,923,020 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.54 |
Mean single sequence MFE | -28.56 |
Consensus MFE | -17.17 |
Energy contribution | -20.40 |
Covariance contribution | 3.23 |
Combinations/Pair | 1.03 |
Mean z-score | -1.78 |
Structure conservation index | 0.60 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16922926 94 - 22224390 -----------UGCGUAGAAAGUGAAAGAUCUGAAGAGUCGUCUCCGGAUUUAGACAUUGUCGCCAUAUCCGAGACGGAAUCUCGAUC--------------UCCUAACUCAUUCAGCG -----------..(((.((((((...(((((.((.((.(((((((.((((...(((...))).....)))))))))))..))))))))--------------)....)))..))).))) ( -26.40) >DroSec_CAF1 9792 105 - 1 UAAUUGCAGAAUGCGUAGAAAGUGAAAGAUCUGAAGAGUCGUCUCCGGAUUUAGACAUUGUCGCCAUAUCCGAGACGGAAUCUCGAUC--------------UCCUAACUCAUUCUGCG .....((((((((.......(((...(((((.((.((.(((((((.((((...(((...))).....)))))))))))..))))))))--------------)....))))))))))). ( -33.61) >DroSim_CAF1 11093 105 - 1 UAAUUGCAGAAUGCGUAGAAAGUGAAAGAUCUGAAGAGUCGUCUCCGGAUUUAGACAUUGUCGCCAUAUCCGAGACGGAAUCUCGAUC--------------UCCUAACUCAUUCUGCG .....((((((((.......(((...(((((.((.((.(((((((.((((...(((...))).....)))))))))))..))))))))--------------)....))))))))))). ( -33.61) >DroEre_CAF1 9733 118 - 1 UAAUUGCAGAAUGCGUAGAAAGUGAAAGAUACGAAGAGUAGUCUCCAGACUUAGACAUGGUCGCCAUAUCCGAGACGGAAUCUCGAUCUCCGAUCUCCUAUCUCCUAACUCAAACUGC- .....((((....((((............))))..((((((((....))))..((.((((...)))).)).((((((((.........)))).))))..........))))...))))- ( -24.00) >DroYak_CAF1 9685 90 - 1 UAAUUGCAGAAUGCGUAGAAAGUGAAAGAUUUG--------------GUUUUAGACAUUGUCGCCAUAACCGAGACGGAAUCUCGAUC--------------UCCUAAAGCAUUCUGC- .....(((((((((.(((..............(--------------(((...(((...))).....))))(((((((....))).))--------------)))))..)))))))))- ( -25.20) >consensus UAAUUGCAGAAUGCGUAGAAAGUGAAAGAUCUGAAGAGUCGUCUCCGGAUUUAGACAUUGUCGCCAUAUCCGAGACGGAAUCUCGAUC______________UCCUAACUCAUUCUGCG .....((((((((.((.((.((((..(((((((.(((....))).)))))))...)))).))........(((((.....)))))......................)).)))))))). (-17.17 = -20.40 + 3.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:14 2006