Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,922,516 – 16,922,627 |
Length | 111 |
Max. P | 0.500000 |
Location | 16,922,516 – 16,922,627 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 76.43 |
Mean single sequence MFE | -37.45 |
Consensus MFE | -18.36 |
Energy contribution | -20.43 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.16 |
Mean z-score | -2.09 |
Structure conservation index | 0.49 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16922516 111 + 22224390 GUGGGGGAGGCAGUGGGGCACAGGCUCCA-AGAGCCUCCAACACUUAAUAGCUGGCAAUGACGACAAUUCAGUCCGAUUGCUCAUCCAAUCUGCCAACUGCCUGCAAACU-GA (..((((((((..((((((....))))))-...)))))).........(((.(((((.....(((......))).(((((......)))))))))).)))))..).....-.. ( -42.90) >DroSec_CAF1 9383 110 + 1 GUGGGGGAGGCAGUGGGGCACAGGCUCCAAAGAGC---CAACACUAAAUGGCCGGCAAUGACGAAUAUUUAGUUUGAUUGCUCAUCCAAUCUGCCAACUGCCUGCGAACUCGA .(((((.(((((((..((((..(((((....))))---)...((((((((..((.......))..))))))))..(((((......))))))))).))))))).)...)))). ( -40.40) >DroSim_CAF1 10708 87 + 1 GUGGGGGAGGCAGUGGGGCACAGGCUCCAAAGAGC---CAACACUAAAUGGCCGGCAAUGACGACAAUUCAGUUCGAUUGCUCAUCCAAA----------------------- ...(((..((((((.((((...(((((....))))---).........((..((.......)).)).....)))).))))))..)))...----------------------- ( -27.30) >DroEre_CAF1 9385 107 + 1 GUGGGGGAGGCGGUGGGGC-CGGGGUCCAA-AAGC---CGACAUUAAAUGGCUGGCAGUGACAACAAUUCAAUUCGAUUGCCCAUCCAAUCGGCCAACUGCCUUCGGGCU-AA .....(((((((((..(((-((((((....-.(((---((........)))))((((((((............)).)))))).))))...))))).))))))))).....-.. ( -39.20) >consensus GUGGGGGAGGCAGUGGGGCACAGGCUCCAAAGAGC___CAACACUAAAUGGCCGGCAAUGACGACAAUUCAGUUCGAUUGCUCAUCCAAUCUGCCAACUGCCUGCGAACU_GA .....(.((((((((((((....)))))....................(((..(((((((((.........)))..))))))...)))........))))))).)........ (-18.36 = -20.43 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:12 2006