Locus 6797

Sequence ID X_DroMel_CAF1
Location 16,920,056 – 16,920,169
Length 113
Max. P 0.648639
window11132

overview

Window 2

Location 16,920,056 – 16,920,169
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 74.87
Mean single sequence MFE -25.62
Consensus MFE -7.52
Energy contribution -8.28
Covariance contribution 0.76
Combinations/Pair 1.42
Mean z-score -1.75
Structure conservation index 0.29
SVM decision value 0.24
SVM RNA-class probability 0.648639
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16920056 113 - 22224390
ACACAACACCGCAGAAGUCGUCGCUCUUUGUAUAGCAUUAAAAAUGGUGAAAUAGAGAAAUCUAUAAAAACAGAAAAGGCGACCAAAGUUCCAUCAGAAGAAGCGGAAAAAGA
........((((....((((((....(((((....(((((....)))))..(((((....)))))....)))))...)))))).....(((.....)))...))))....... ( -24.90)
>DroSec_CAF1 7001 113 - 1
ACACUUCACCGUAGAAGUCGUCGCUCUUUGCAUAGCAUUAAAAAUGGUGGAAUAGAGAAGUCUGUAAAAUCAGAAAGGGCGACCAAAGUUCCUCCAGAGGAAGCUGAAAAAGA
..(((((......))))).((((((((((((...))........((((...(((((....)))))...)))).))))))))))...(((((((....))).))))........ ( -28.10)
>DroSim_CAF1 6936 113 - 1
GCACUUCACCGUAGAAGUCGUCGCUCUUUGCAUAGCAUUAAAAAUGGUGGAAUAGAGAAAUCUGUAAAAUCAGAAAGUGCGACCAAAGUUCCUCCAGAGGAAGCUGAAAAAGA
(((((((......))))).(((((.((((((...))........((((...(((((....)))))...)))).)))).))))).....(((((....)))))))......... ( -28.70)
>DroEre_CAF1 7019 89 - 1
ACACCACGCCUCAGAACUCGUCGCGCUUUGGGUAGCCUUAAAAAUGGUGGAAUAGGGAAAUCUCAAGGAC------------------------CGGAGGGAGCUGAAAAAGA
..........((((..(((..((.((((((((...(((((............)))))....))))))).)------------------------))..)))..))))...... ( -22.60)
>DroYak_CAF1 6943 113 - 1
ACACUUCACCUUAGAAGUCGCCGCUCUUUGGAUAGUUCUAAAAGUGCUGGAACAGAGAAAUCUUUAAAAGUAGGAAGAUCUAUAAAAGUUCCCACAAAAGAAGCUGGAAAAGA
.((((((...((((((.(..(((.....)))..).))))))..(((..((((((((....)))......((((......))))....))))))))....)))).))....... ( -23.80)
>consensus
ACACUUCACCGUAGAAGUCGUCGCUCUUUGCAUAGCAUUAAAAAUGGUGGAAUAGAGAAAUCUGUAAAAUCAGAAAGGGCGACCAAAGUUCCUCCAGAGGAAGCUGAAAAAGA
...........(((...((.(((((........)))........((((...(((((....)))))...))))........................)).))..)))....... ( -7.52 =  -8.28 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:11 2006