Locus 6796

Sequence ID X_DroMel_CAF1
Location 16,916,286 – 16,916,437
Length 151
Max. P 0.809778
window11130 window11131

overview

Window 0

Location 16,916,286 – 16,916,398
Length 112
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 79.58
Mean single sequence MFE -48.97
Consensus MFE -31.85
Energy contribution -31.22
Covariance contribution -0.63
Combinations/Pair 1.39
Mean z-score -1.78
Structure conservation index 0.65
SVM decision value 0.64
SVM RNA-class probability 0.809778
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16916286 112 + 22224390
GCAGUCUGGGCGUUGCAUGCGAUGAGGACUGUGGCUAUGGAACUGGCUGUGAUUUUGGAUGCGGUCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC-UAGGUCCGGGAACCAU
(((((((...(((((....))))).))))))).(((((((..((((((((..........))))))))..))))))).....(((((((..((...-.)).)))))))..... ( -52.00)
>DroSec_CAF1 3291 112 + 1
GCAGUCUGGGCGUUGCAUGCGAUGAGGACUGUGGCUAUGGAACUGGCUGUGAUUUCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC-UAGGUUCGGGAACCAU
(((((((...(((((....))))).))))))).(((((((..((((((((..........))))))))..))))))).....(((((((..((...-.)).)))))))..... ( -51.80)
>DroSim_CAF1 3238 112 + 1
GCAGUCUGGGCGUUGCAUGCGAUGAGGACUGUGGCUAUGGAACUGGCUGUGAUUUCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC-UAGGUUCGGGAACCAU
(((((((...(((((....))))).))))))).(((((((..((((((((..........))))))))..))))))).....(((((((..((...-.)).)))))))..... ( -51.80)
>DroEre_CAF1 3296 112 + 1
GCAGCCUGGGCAUUGCGUGCGAUGAGGACUGUGGCUAUGGAACUGGCUGUGAUGCCGCAUGCGGCGAGGCCCAUGGCAUUGAUCCCGGCAGCUUUU-UCCUUCCGGGAACCAU
...((((((((.((((.(((.(((.((..((..((((......))))..))...)).)))))))))).))))).))).....((((((.((.....-..)).))))))..... ( -45.40)
>DroYak_CAF1 3272 112 + 1
GCAGCCUGGGCGUGGCAUGCGACGAGGACUGCGGCUAUGGUACUGGCUGUGAUGCCGCCUGCGGUGAGGCACAUGGCGUUGAUCCCGGUAGCUUUG-UCUAUCCGGGAACGCU
(((((((.(.(((.....))).).))).)))).((((((.....(((......)))((((......)))).)))))).....(((((((((.....-.))).))))))..... ( -46.80)
>DroAna_CAF1 3172 113 + 1
GCUCCCUGGGUGCGCCCUGUGACGAGGAUUGCGGCUACGGCACCGGAUGUGAUGCCGGAUGUGCCACCGCCCACGGCCAGGGCUCCGUCAGCAGUGAUCCGUAUGGUGGCGUU
(((.....)))((((((((((....((((..(.(((((((((((((........))))...))))...((((.......))))...)).))).)..)))).))))).))))). ( -46.00)
>consensus
GCAGCCUGGGCGUUGCAUGCGAUGAGGACUGUGGCUAUGGAACUGGCUGUGAUGCCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC_UAGGUCCGGGAACCAU
(((((((.(.(((.....))).).))).)))).(((((((..((.(((((..........))))).))..))))))).....((((((..............))))))..... (-31.85 = -31.22 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 16,916,326 – 16,916,437
Length 111
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 73.97
Mean single sequence MFE -44.85
Consensus MFE -24.19
Energy contribution -24.92
Covariance contribution 0.73
Combinations/Pair 1.52
Mean z-score -1.60
Structure conservation index 0.54
SVM decision value 0.26
SVM RNA-class probability 0.659108
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16916326 111 + 22224390
AACUGGCUGUGAUUUUGGAUGCGGUCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC-UAGGUCCGGGAACCAUGGGAACUGGUCCAUUAAUAUUGACAACGGGAUCAGGA-GG
..((((((((..........)))))))).(((((((......(((((((..((...-.)).))))))).)))))))..(((((((................)))))))..-.. ( -43.09)
>DroSec_CAF1 3331 111 + 1
AACUGGCUGUGAUUUCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC-UAGGUUCGGGAACCAUGGGUACUGGUCCCUUAACAUUGGCAACGGGAUCAGGA-GG
..((((((((..........))))))))((((((((......(((((((..((...-.)).))))))).)))))))).((((((((........(....)))))))))..-.. ( -48.20)
>DroSim_CAF1 3278 111 + 1
AACUGGCUGUGAUUUCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC-UAGGUUCGGGAACCAUGGGUACUGGCCCCUUAACAUUGGCAACGGGAUCAGGA-GG
.......(.((((..((..(((((((((((((((((......(((((((..((...-.)).))))))).)))))))).)))))).(........)))).))..)))).).-.. ( -46.30)
>DroEre_CAF1 3336 111 + 1
AACUGGCUGUGAUGCCGCAUGCGGCGAGGCCCAUGGCAUUGAUCCCGGCAGCUUUU-UCCUUCCGGGAACCAUGGGCAAUGGUCCGUUGAUAUUGGCACCGGGUUCAGGA-GG
..((((((....(((((....)))))..((((((((......((((((.((.....-..)).)))))).))))))))..(((((((.......))).)))))).))))..-.. ( -43.20)
>DroYak_CAF1 3312 111 + 1
UACUGGCUGUGAUGCCGCCUGCGGUGAGGCACAUGGCGUUGAUCCCGGUAGCUUUG-UCUAUCCGGGAACGCUGGGCAAUGCACCGUUAAUCUUGGCACCGGCAUCAGGA-GG
.......(.((((((((((.((((((..((...((((((...(((((((((.....-.))).)))))))))))).))....)))))).......)))...))))))).).-.. ( -45.20)
>DroAna_CAF1 3212 104 + 1
CACCGGAUGUGAUGCCGGAUGUGCCACCGCCCACGGCCAGGGCUCCGUCAGCAGUGAUCCGUAUGGUGGCGUUG------UCACGG---GUAUGGGCACCGGUAUUGCCAUGG
..(((...(..(((((((...((((...((((((((.((..(((.....)))..))..))))...(((((...)------))))))---))...)))))))))))..)..))) ( -43.10)
>consensus
AACUGGCUGUGAUGCCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUC_UAGGUCCGGGAACCAUGGGCACUGGUCCGUUAAUAUUGGCAACGGGAUCAGGA_GG
.........((((((((..(((((((..((((((((......((((((..............)))))).))))))))...))))...........))).))))))))...... (-24.19 = -24.92 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:10 2006