Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,915,579 – 16,915,683 |
Length | 104 |
Max. P | 0.987955 |
Location | 16,915,579 – 16,915,683 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.38 |
Mean single sequence MFE | -39.52 |
Consensus MFE | -32.97 |
Energy contribution | -35.35 |
Covariance contribution | 2.38 |
Combinations/Pair | 1.12 |
Mean z-score | -2.70 |
Structure conservation index | 0.83 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16915579 104 + 22224390 UUCAGUUGGAGGAGGAGUAGAGGAAGACAGUGGCUCAUCAUUGCCUGCCACCGCCAAAGCGUUACUCCUCCAGCCGGACGGUAAUAAAGCACCAACCAU---GACAU .((((((((.((((((((((.((.((.((((((....)))))).)).))..(((....))))))))))))).(((....))).........)))))..)---))... ( -37.20) >DroSec_CAF1 2592 107 + 1 AUCAGUUGGAGGAGGAGUAGCGGAAGGCAGUCCUUCAGCAUUGCCUGCCACCGCCAAAGCGGUACUCCUCCAGCCGGACGGUAAUAAAGCACCCACCAUGAUGACAU ((((((((((((((.......((.(((((((.(....).))))))).))(((((....))))).)))))))))).((..(((........)))..)).))))..... ( -43.40) >DroSim_CAF1 2540 107 + 1 AUCAGUUGGAGGAGGAGUAGCGGAAGGCAGUCCUUCAGCAUUGCCUGCCACCGCCAAAGCGAUACUCCUCCAGCCGGACGGUAAUCAAGCACCCACCAUGAUGACAU ((((..(((.(((((((((..((.(((((((.(....).))))))).))..(((....))).))))))))).(((....)))..........)))...))))..... ( -39.80) >DroEre_CAF1 2607 104 + 1 CUCUGUGGGAGGAGGAGCAGCAGAGGGCAGUGGCUCAUCAUCGCCAGCCACCGCCAAAGCGCUUCCCCUUCAGCCAGACGGUAAUAAAGCACCCACCAU---CACAU ....((((((((.(((((.((....(((.((((((..........)))))).)))...))))))).)))...(((....))).........)))))...---..... ( -37.70) >consensus AUCAGUUGGAGGAGGAGUAGCGGAAGGCAGUCCCUCAGCAUUGCCUGCCACCGCCAAAGCGAUACUCCUCCAGCCGGACGGUAAUAAAGCACCCACCAU___GACAU ....(((((.(((((((((((((.(((((((((....))))))))).))...((....))))))))))))).(((....))).........)))))........... (-32.97 = -35.35 + 2.38)
Location | 16,915,579 – 16,915,683 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 86.38 |
Mean single sequence MFE | -41.88 |
Consensus MFE | -33.29 |
Energy contribution | -33.85 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -2.06 |
Structure conservation index | 0.79 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16915579 104 - 22224390 AUGUC---AUGGUUGGUGCUUUAUUACCGUCCGGCUGGAGGAGUAACGCUUUGGCGGUGGCAGGCAAUGAUGAGCCACUGUCUUCCUCUACUCCUCCUCCAACUGAA ...((---(.((.(((((......))))).))((..(((((((((.......(((((((((...((....)).)))))))))......))))))))).))...))). ( -40.52) >DroSec_CAF1 2592 107 - 1 AUGUCAUCAUGGUGGGUGCUUUAUUACCGUCCGGCUGGAGGAGUACCGCUUUGGCGGUGGCAGGCAAUGCUGAAGGACUGCCUUCCGCUACUCCUCCUCCAACUGAU ..((((....((..((((......))))..))((..(((((((((.(((....)))((((.(((((.(.(....).).))))).))))))))))))).))...)))) ( -42.00) >DroSim_CAF1 2540 107 - 1 AUGUCAUCAUGGUGGGUGCUUGAUUACCGUCCGGCUGGAGGAGUAUCGCUUUGGCGGUGGCAGGCAAUGCUGAAGGACUGCCUUCCGCUACUCCUCCUCCAACUGAU .....((((...((((.(((.(((....))).))).(((((((((.(((....)))((((.(((((.(.(....).).))))).)))))))))))))))))..)))) ( -42.10) >DroEre_CAF1 2607 104 - 1 AUGUG---AUGGUGGGUGCUUUAUUACCGUCUGGCUGAAGGGGAAGCGCUUUGGCGGUGGCUGGCGAUGAUGAGCCACUGCCCUCUGCUGCUCCUCCUCCCACAGAG .((((---(((((((........)))))))).((..(.(((((.((((....((((((((((.(......).))))))))))...)))).))))).)..)))))... ( -42.90) >consensus AUGUC___AUGGUGGGUGCUUUAUUACCGUCCGGCUGGAGGAGUAACGCUUUGGCGGUGGCAGGCAAUGAUGAACCACUGCCUUCCGCUACUCCUCCUCCAACUGAU ..........((..((((......))))..))((..(((((((((.(((....)))((((.(((((.((......)).))))).))))))))))))).))....... (-33.29 = -33.85 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:08 2006