Locus 6794

Sequence ID X_DroMel_CAF1
Location 16,913,827 – 16,913,927
Length 100
Max. P 0.620941
window11127

overview

Window 7

Location 16,913,827 – 16,913,927
Length 100
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 84.49
Mean single sequence MFE -17.98
Consensus MFE -12.46
Energy contribution -12.62
Covariance contribution 0.16
Combinations/Pair 1.16
Mean z-score -1.77
Structure conservation index 0.69
SVM decision value 0.18
SVM RNA-class probability 0.620941
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16913827 100 - 22224390
AGUAUUUCUUAAGUUC-UUGCCAAAUGUACGCACUGUCUUAGUAUUAUAUGCGGAUAUAAUAUA-GCGUGCCUUGCCUUUUAUAAAUUCAUUUUCUUA-AAUA
................-..((.....((((((((((...))))(((((((....)))))))...-))))))...))......................-.... ( -11.60)
>DroSec_CAF1 845 100 - 1
AGUAUUUCUUAAGUUC-UUGCCAAAGGUACGCAUUGUGUUAGUAUUAUAUUCUGAUAUAAUAUA-GCGUGCGAUGCCUUUUAUAAAUUUAAUUUCUUA-AAUA
........(((((((.-.((..((((((((((((...((((.((((((((....))))))))))-))))))).)))))))))..))))))).......-.... ( -21.60)
>DroSim_CAF1 837 102 - 1
AGUAUUUCUUAAGUUC-UUGCCAAAGGUACGCACUGUCUUAGUAUUAUAUUCUGAUAUAAUAUGGGCGUGCGUUGCCUUUUAUAAAUUCAAUUUCUUAAAAUA
........(((((...-(((..((((((((((((.((((..(((((((((....)))))))))))))))))).)))))))........)))...))))).... ( -24.90)
>DroEre_CAF1 870 101 - 1
AGUAUGUCUUAAAUUCGUUUCGAAAAGUACGCACUGUCGUAGUAUUAUAUUCUCAUAUAAUAUA-GCGUGCAUUACCUUUUAACAAUUUACUUUCUUA-AAUA
((((..(.(((((((((...))))..((((((((....)).(((((((((....))))))))).-)))))).......))))).)...))))......-.... ( -15.60)
>DroYak_CAF1 892 94 - 1
------UCUUAAGUUC-UUUCGAAAGAUACGCACUGUCGUAGUAUUAUAUUCUCAUAUAAUACA-CCGUGCACUACCUUUUAACAAAUUACUUUCUUA-AAUA
------..(((((...-..((....))...((((.((....(((((((((....))))))))))-).)))).......................))))-)... ( -16.20)
>consensus
AGUAUUUCUUAAGUUC_UUGCCAAAGGUACGCACUGUCUUAGUAUUAUAUUCUGAUAUAAUAUA_GCGUGCAUUGCCUUUUAUAAAUUUAAUUUCUUA_AAUA
.................(((..(((((((.((((.((....(((((((((....)))))))))..))))))..)))))))..))).................. (-12.46 = -12.62 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:06 2006