| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,911,414 – 16,911,506 |
| Length | 92 |
| Max. P | 0.999648 |
| Location | 16,911,414 – 16,911,506 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 94.77 |
| Mean single sequence MFE | -18.26 |
| Consensus MFE | -15.72 |
| Energy contribution | -15.72 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.86 |
| SVM decision value | 2.93 |
| SVM RNA-class probability | 0.997763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16911414 92 + 22224390 CUUCCUUUUUGUCCUCUCCUUAAUGCAAUUAGCAUUCGGAACGCCUUUAAUUUUUCACUUAAAGCACACACGGCAUUCGCCUCUGCGUGCAC ................(((..(((((.....))))).))).......................((((.((.(((....)))..)).)))).. ( -18.50) >DroSec_CAF1 6888 89 + 1 CUUCCUUUUUGUCCUC---UUAAUGCAAUUAGCAUUCGGAACGCCUUUAAUUUUUCACUUAAAGCACACACGGCAUUCGCCUCUGCGUGCAC ..........((..((---(.(((((.....))))).)))..))...................((((.((.(((....)))..)).)))).. ( -18.90) >DroSim_CAF1 7428 89 + 1 CUUCCUUUUUGUCCUC---UUAAUGCAAUUAGCAUUCGGAACGCCUUUAAUUUUUCACUUAAAGCACACACGGCAUUCGCCUCUGCGUGCAC ..........((..((---(.(((((.....))))).)))..))...................((((.((.(((....)))..)).)))).. ( -18.90) >DroEre_CAF1 7196 92 + 1 CUUCCUUUUUCGUCUCUCAUUAAUGCAAUUAGCAUUCGGAACGCCUUUAAUUCUUCACUUAAAGCACACACGGCAUUCGCCUCUGCGUGCGC ..........(((.(((....(((((.....))))).))))))....................((((.((.(((....)))..)).)))).. ( -17.40) >DroYak_CAF1 7025 92 + 1 CUUCCUUUUUGAUCUCUCCUUAAUGCAAUUAGCAUUCGGAACGCCUUUAAUUUUUCACUUAAAGCACACACGGCAUUCGCCUCUGCGUGCCC ................(((..(((((.....))))).))).......................((((.((.(((....)))..)).)))).. ( -17.60) >consensus CUUCCUUUUUGUCCUCUC_UUAAUGCAAUUAGCAUUCGGAACGCCUUUAAUUUUUCACUUAAAGCACACACGGCAUUCGCCUCUGCGUGCAC ...............................((((.((((..((.(((((........)))))))......(((....))))))).)))).. (-15.72 = -15.72 + -0.00)
| Location | 16,911,414 – 16,911,506 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 94.77 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -21.99 |
| Energy contribution | -21.99 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.90 |
| SVM decision value | 3.83 |
| SVM RNA-class probability | 0.999648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16911414 92 - 22224390 GUGCACGCAGAGGCGAAUGCCGUGUGUGCUUUAAGUGAAAAAUUAAAGGCGUUCCGAAUGCUAAUUGCAUUAAGGAGAGGACAAAAAGGAAG ((.((((((..(((....))).)))))(((((.(((.....))).))))).((((.(((((.....)))))..)))).).)).......... ( -24.10) >DroSec_CAF1 6888 89 - 1 GUGCACGCAGAGGCGAAUGCCGUGUGUGCUUUAAGUGAAAAAUUAAAGGCGUUCCGAAUGCUAAUUGCAUUAA---GAGGACAAAAAGGAAG (((((((((..(((....))).)))))))(((((.(....).))))).))((((..(((((.....)))))..---..)))).......... ( -24.00) >DroSim_CAF1 7428 89 - 1 GUGCACGCAGAGGCGAAUGCCGUGUGUGCUUUAAGUGAAAAAUUAAAGGCGUUCCGAAUGCUAAUUGCAUUAA---GAGGACAAAAAGGAAG (((((((((..(((....))).)))))))(((((.(....).))))).))((((..(((((.....)))))..---..)))).......... ( -24.00) >DroEre_CAF1 7196 92 - 1 GCGCACGCAGAGGCGAAUGCCGUGUGUGCUUUAAGUGAAGAAUUAAAGGCGUUCCGAAUGCUAAUUGCAUUAAUGAGAGACGAAAAAGGAAG (((((((((..(((....))).)))))))(((((........))))).)).((((.(((((.....)))))..(....)........)))). ( -25.10) >DroYak_CAF1 7025 92 - 1 GGGCACGCAGAGGCGAAUGCCGUGUGUGCUUUAAGUGAAAAAUUAAAGGCGUUCCGAAUGCUAAUUGCAUUAAGGAGAGAUCAAAAAGGAAG (((((((((..(((....))).)))))))))................(((.((((.(((((.....)))))..)))).).)).......... ( -25.20) >consensus GUGCACGCAGAGGCGAAUGCCGUGUGUGCUUUAAGUGAAAAAUUAAAGGCGUUCCGAAUGCUAAUUGCAUUAA_GAGAGGACAAAAAGGAAG ..(((((((..(((....))).)))))))......................((((.(((((.....)))))................)))). (-21.99 = -21.99 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:02 2006