| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,904,197 – 16,904,292 |
| Length | 95 |
| Max. P | 0.750640 |
| Location | 16,904,197 – 16,904,292 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.63 |
| Mean single sequence MFE | -32.72 |
| Consensus MFE | -26.09 |
| Energy contribution | -25.62 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16904197 95 - 22224390 -------UAGGAUCAGGAGCAGGUUAGGCUGCGCGUACAUCGCAAGCUGUCUGUUAGGCUCAAAAAGAGCUUCUUCUGGCGCAGCUGAUGAUGAUU---GCGAUG---------- -------....(((....((((......))))(((..(((((..((((((..(((((((((.....)))).....)))))))))))..)))))..)---))))).---------- ( -32.10) >DroVir_CAF1 93773 99 - 1 ----------GAUCAGGAGCAAUUUAGGCUGCGCGUGCAUCGCAAGCUGUCUGUCAGGCUCAAAAAGAGCACAUUUUGGCGCAGCUGAUGAUGAUGAAAGCAAUGCCC------C ----------.....((.(((......(((...(((.(((((..((((((..(((((((((.....)))).....)))))))))))..))))))))..)))..)))))------. ( -31.90) >DroSec_CAF1 102644 102 - 1 CGAUACUUAGGAUCAGGAGCAGGUUAGGCUGCGCGUACAUCGCAAGCUGUCUGUUAGGCUCAAAAAGAGCUUCUUCUGGCGCAGCUGAUGAUGAUU---GCGAUG---------- ...........(((....((((......))))(((..(((((..((((((..(((((((((.....)))).....)))))))))))..)))))..)---))))).---------- ( -32.10) >DroYak_CAF1 89662 92 - 1 ----------GAUCAGGAGCAGGUUAGGCUGCGCGUACAUCGCAAGCUGUCUGUUAGGCUCAAAAAGAGCUUCUUCUGGCGCAGCUGAUGAUGAUU---GCGAUG---------- ----------.(((....((((......))))(((..(((((..((((((..(((((((((.....)))).....)))))))))))..)))))..)---))))).---------- ( -32.10) >DroMoj_CAF1 155125 105 - 1 ----------GAUCAGGAGCAAUUUAGGCUGCGCGUGCAUCGUAAGCUGUCAGUCAGGCUCAAAAAGAGCUCCCUUUGGCGCAGCUGAUGAUGAUGAAAGCAAUGCCCACCAUCC ----------.....((.(((......(((...(((.((((((.((((((..(((((((((.....))))).....)))))))))).)))))))))..)))..)))))....... ( -35.00) >DroAna_CAF1 115622 86 - 1 ----------GAUCAGGAGCAGGUUAGGCUCCGCGUCCAUCGCAAGCUGUCGGUCAGGCUCAAAAAGAGCAUAUUCUGGCGCAGCUGAUGAUGAUG------------------- ----------(((..(((((.......)))))..)))(((((..((((((..(((((((((.....)))).....)))))))))))..)))))...------------------- ( -33.10) >consensus __________GAUCAGGAGCAGGUUAGGCUGCGCGUACAUCGCAAGCUGUCUGUCAGGCUCAAAAAGAGCUUCUUCUGGCGCAGCUGAUGAUGAUG___GCGAUG__________ ...............(.(((.......))).).....(((((..((((((..(((((((((.....)))).....)))))))))))..)))))...................... (-26.09 = -25.62 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:00 2006