| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,894,071 – 16,894,162 |
| Length | 91 |
| Max. P | 0.908320 |
| Location | 16,894,071 – 16,894,162 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 93.39 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -16.34 |
| Energy contribution | -16.15 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16894071 91 - 22224390 GACAACUUCUCAUUUCUAUUGUGAACAGAACGCAACAGGGAAACGAUGUCAUUGUAAAAAGGAGAGGACAACAGGAAAACAAAAGUAUCCU .....((((((.(..((.(((((.......))))).))..).(((((...)))))......)))))).....((((..((....)).)))) ( -17.00) >DroSim_CAF1 73367 91 - 1 GACAACUUCUCAUUUCUGUUGUGAACAGAACGCAACAGGGAAACGAUGUCAUUGUAAAAAGAAGAGGACAACAGGAAAACAAAAGUAUCCU .....((((((.(..((((((((.......))))))))..).(((((...))))).....).))))).....((((..((....)).)))) ( -19.40) >DroEre_CAF1 77213 90 - 1 GACAACUUCGCAUUUCUGUUGUGAACACAACGCAACAGGAAAACGAUGUCAUUGCAAAAA-AAAAGGACAACAGGAAAACAAAAGUAUCCU ((((...(((..(((((((((((.......)))))))))))..)))))))..........-...........((((..((....)).)))) ( -21.10) >DroYak_CAF1 79533 90 - 1 GAUAACUUCUCAUUUCUGUUGUGAGCAGAACGCAACAGGAAAACGAUGUCAUUGCAAAAA-AAGAGGACAACAGGAAAACAGAAGUAUCCU ((((.(((((..(((((((((((.......)))))))))))...(.((((.((.......-))...)))).)........))))))))).. ( -22.40) >consensus GACAACUUCUCAUUUCUGUUGUGAACAGAACGCAACAGGAAAACGAUGUCAUUGCAAAAA_AAGAGGACAACAGGAAAACAAAAGUAUCCU ((((...((...(((((((((((.......)))))))))))...))))))......................((((..((....)).)))) (-16.34 = -16.15 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:59 2006