Locus 6788

Sequence ID X_DroMel_CAF1
Location 16,892,574 – 16,892,690
Length 116
Max. P 0.789399
window11118

overview

Window 8

Location 16,892,574 – 16,892,690
Length 116
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 96.05
Mean single sequence MFE -22.67
Consensus MFE -19.77
Energy contribution -19.77
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.87
SVM decision value 0.58
SVM RNA-class probability 0.789399
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16892574 116 - 22224390
AACAACAAGCCAAUGUUGAGUGCCAAGUACUUUCUACUUUAACUGUAUUAUAGUACAAGUACUUUCCUUAGUAAGUGCAUUUUAGUUACACUAUUAUGUGGAA--UUUUUUCCCAUUC
..(((((......)))))((((....(((((...(((.......)))....)))))..((((((........))))))..........))))...(((.((((--....))))))).. ( -23.40)
>DroSec_CAF1 91437 118 - 1
AACAACAAGCCAAUGUUGAGUACCAAGUACUUUCUACUUUAACUGCAUUAUAGUACAAGUACUUUCCUUAGUAACAGCAUUUUAGUUACACUAUUAUGUGGAAUAUUUUUUUCCAUUC
..(((((......)))))(((...((((((((..((((.(((.....))).)))).))))))))......(((((.........)))))))).....((((((.......)))))).. ( -22.30)
>DroSim_CAF1 71914 118 - 1
AACAACAAGCCAAUGUUGAGUACCAAGUACUUUCUACUUUAACUGCAUUAUAGUACAAGUACUUUCCUUAGUAACAGCAUUUUAGUUACACUAUUAUGUGGAAUAUUUUUUUCCAUUC
..(((((......)))))(((...((((((((..((((.(((.....))).)))).))))))))......(((((.........)))))))).....((((((.......)))))).. ( -22.30)
>consensus
AACAACAAGCCAAUGUUGAGUACCAAGUACUUUCUACUUUAACUGCAUUAUAGUACAAGUACUUUCCUUAGUAACAGCAUUUUAGUUACACUAUUAUGUGGAAUAUUUUUUUCCAUUC
..(((((......)))))....((((((((((..((((.(((.....))).)))).))))))))............((((..(((.....)))..))))))................. (-19.77 = -19.77 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:58 2006