Locus 6786

Sequence ID X_DroMel_CAF1
Location 16,886,599 – 16,886,692
Length 93
Max. P 0.751462
window11114

overview

Window 4

Location 16,886,599 – 16,886,692
Length 93
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 85.06
Mean single sequence MFE -24.56
Consensus MFE -17.02
Energy contribution -17.06
Covariance contribution 0.04
Combinations/Pair 1.15
Mean z-score -2.01
Structure conservation index 0.69
SVM decision value 0.48
SVM RNA-class probability 0.751462
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16886599 93 + 22224390
CUACC-----GAGCACCAAGUAGCUACAACCAAGUAGCAAGUACAAAGCAGCAAGUCUGUAAAAGAUGC-----UCAGCCAGCAAAAAGGAUGGGGCUAAAUU
.....-----(((((.(.....(((((......))))).........((((.....))))....).)))-----))((((..((.......)).))))..... ( -22.30)
>DroSec_CAF1 85867 92 + 1
CUACC-----AAGCACCAAGUAGCUACAACCAAGUAGCAAGCACAAAGCAGCAAGUCUGCC-AAGCUGC-----UCAGCCAGCAAAAAGGAUGGGGCUAAAUU
.....-----.(((.(((....(((((......)))))..((....((((((.........-..)))))-----)......))........))).)))..... ( -23.10)
>DroSim_CAF1 66208 92 + 1
CUACC-----AAGCACCAAGUAGCUACAACCAAGUAGCAAGCACAAAGCAGCAAGUCUGCC-AAGCUGC-----UCAGCCAGCAAAAAGGAUGGGGCUAAAUU
.....-----.(((.(((....(((((......)))))..((....((((((.........-..)))))-----)......))........))).)))..... ( -23.10)
>DroEre_CAF1 70456 97 + 1
CUACC-----AAGUACCAAGUGGCUACAAGCAAGUGGCAAGUACCAAGCAGCAAGUCUGCC-AAGCUGCUUUGCUCAGCGAGCAAAAUGGAUGGGGCUAAAUU
.....-----.((..(((....(((((......))))).....(((.(((((.........-..)))))(((((((...))))))).))).)))..))..... ( -29.20)
>DroYak_CAF1 72184 90 + 1
CUACCAAGCCAAGUACCAAGUAGCUACAAGCAAGUAG-------CAAGCAGCAAGUCUGCC-CAGCUGC-----UGAGCGAGCAAAGAGGAUGGGGCCAAAUU
.......(((..((.((.....(((....((.(((((-------(..((((.....)))).-..)))))-----)..)).))).....))))..)))...... ( -25.10)
>consensus
CUACC_____AAGCACCAAGUAGCUACAACCAAGUAGCAAGCACAAAGCAGCAAGUCUGCC_AAGCUGC_____UCAGCCAGCAAAAAGGAUGGGGCUAAAUU
...........(((.(((....(((((......))))).........((((.....))))....(((((........)).)))........))).)))..... (-17.02 = -17.06 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:54 2006